RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 STEAP4Q687X5 459 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 PDPK2PQ6A1A2 396 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 SWSAP1Q6NVH7 229 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 NPNTQ6UXI9 565 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 ZPBP2Q6X784 338 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 RBM44Q6ZP01 1051 aaKnown RBP7.53□□□□□ -1.2
USP48-206ENST00000464577 ZCCHC23Q6ZST2 131 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 MAVSQ7Z434 540 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 VSIG10LQ86VR7 867 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 DEFB107AQ8IZN7 70 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 POU5F2Q8N7G0 328 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 DDI1Q8WTU0 396 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 TFB1MQ8WVM0 346 aaKnown RBP7.53□□□□□ -1.2
USP48-206ENST00000464577 LPAR1Q92633 364 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 MCRS1Q96EZ8 462 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 SIGLEC10Q96LC7 697 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 RTKNQ9BST9 563 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 TARS2Q9BW92 718 aaKnown RBP7.53□□□□□ -1.2
USP48-206ENST00000464577 UGT1A7Q9HAW7 530 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 UGT1A10Q9HAW8 530 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 UGT1A8Q9HAW9 530 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 RAVER2Q9HCJ3 691 aaKnown RBP7.53□□□□□ -1.2
USP48-206ENST00000464577 THEGQ9P2T0 379 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 FBXO40Q9UH90 709 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 PCSK1NQ9UHG2 260 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 EMCNQ9ULC0 261 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 ARHGAP26Q9UNA1 814 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 INPP5FQ9Y2H2 1132 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 PCDHA11Q9Y5I1 949 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 CNTNAP1P78357 1384 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 ARHGAP10A1A4S6 786 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 TCP10L2B9ZVM9 353 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 ZNF195O14628 629 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 KCNN4O15554 427 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 DNAJA2O60884 412 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 LYPLA1O75608 230 aaPredicted RBP7.53□□□□□ -1.2
USP48-206ENST00000464577 ZBED1O96006 694 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 ERBB2P04626 1255 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 PMLP29590 882 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 HARS2P49590 506 aaKnown RBP7.53□□□□□ -1.2
USP48-206ENST00000464577 ZNF143P52747 638 aaPredicted RBP7.53□□□□□ -1.2
USP48-206ENST00000464577 HIRAP54198 1017 aaPredicted RBP7.53□□□□□ -1.2
USP48-206ENST00000464577 CDH6P55285 790 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 RPL10AP62906 217 aaKnown RBP7.53□□□□□ -1.2
USP48-206ENST00000464577 SULT2A1Q06520 285 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 PDK2Q15119 407 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 INSCQ1MX18 579 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 MTERF2Q49AM1 385 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 ZNF394Q53GI3 561 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 SLC27A3Q5K4L6 730 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 RARS2Q5T160 578 aaKnown RBP7.53□□□□□ -1.2
USP48-206ENST00000464577 N4BP2L1Q5TBK1 243 aaPredicted RBP7.53□□□□□ -1.2
USP48-206ENST00000464577 MROH9Q5TGP6 573 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 ZFP1Q6P2D0 407 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 KLHDC10Q6PID8 442 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 C1orf228Q6PIY5 440 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 ABHD15Q6UXT9 468 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 ZNF534Q76KX8 674 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 HPS6Q86YV9 775 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 CCDC60Q8IWA6 550 aaPredicted RBP7.53□□□□□ -1.2
USP48-206ENST00000464577 EMC1Q8N766 993 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 TRAF3IP1Q8TDR0 691 aaPredicted RBP7.53□□□□□ -1.2
USP48-206ENST00000464577 DEPDC1BQ8WUY9 529 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 USP6NLQ92738 828 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 GFM2Q969S9 779 aaKnown RBP7.53□□□□□ -1.2
USP48-206ENST00000464577 CCDC124Q96CT7 223 aaKnown RBP7.53□□□□□ -1.2
USP48-206ENST00000464577 RNF157Q96PX1 679 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 PEBP4Q96S96 227 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 SORT1Q99523 831 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 GLIS2Q9BZE0 524 aaPredicted RBP7.53□□□□□ -1.2
USP48-206ENST00000464577 JPH1Q9HDC5 661 aaPredicted RBP7.53□□□□□ -1.2
USP48-206ENST00000464577 HOMER2Q9NSB8 354 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 MOCS1Q9NZB8 636 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 ZNF70Q9UC06 446 aaPredicted RBP7.53□□□□□ -1.2
USP48-206ENST00000464577 DCDC2Q9UHG0 476 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 CYTH4Q9UIA0 394 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 VPS28Q9UK41 221 aa7.53□□□□□ -1.2
USP48-206ENST00000464577 CAPN8A6NHC0 703 aa7.52□□□□□ -1.21
USP48-206ENST00000464577 LRRIQ4A6NIV6 560 aa7.52□□□□□ -1.21
USP48-206ENST00000464577 ZNF487B1APH4 448 aa7.52□□□□□ -1.21
USP48-206ENST00000464577 APOL1O14791 398 aa7.52□□□□□ -1.21
USP48-206ENST00000464577 ZSCAN9O15535 394 aaPredicted RBP7.52□□□□□ -1.21
USP48-206ENST00000464577 HNRNPRO43390 633 aaKnown RBP7.52□□□□□ -1.21
USP48-206ENST00000464577 ALDH1A2O94788 518 aa7.52□□□□□ -1.21
USP48-206ENST00000464577 TOMM70O94826 608 aa7.52□□□□□ -1.21
USP48-206ENST00000464577 FBXO21O94952 628 aa7.52□□□□□ -1.21
USP48-206ENST00000464577 PGM3O95394 542 aa7.52□□□□□ -1.21
USP48-206ENST00000464577 CRTAMO95727 393 aa7.52□□□□□ -1.21
USP48-206ENST00000464577 ITGBL1O95965 494 aaPredicted RBP7.52□□□□□ -1.21
USP48-206ENST00000464577 CAPNS1P04632 268 aa7.52□□□□□ -1.21
USP48-206ENST00000464577 EDN1P05305 212 aa7.52□□□□□ -1.21
USP48-206ENST00000464577 ASNSP08243 561 aa7.52□□□□□ -1.21
USP48-206ENST00000464577 SUPT20HL2P0C7V6 817 aa7.52□□□□□ -1.21
USP48-206ENST00000464577 COX4I1P13073 169 aa7.52□□□□□ -1.21
USP48-206ENST00000464577 CPA3P15088 417 aa7.52□□□□□ -1.21
USP48-206ENST00000464577 NUMBP49757 651 aa7.52□□□□□ -1.21
USP48-206ENST00000464577 TRPC3Q13507 836 aa7.52□□□□□ -1.21
USP48-206ENST00000464577 CYLC2Q14093 348 aaPredicted RBP7.52□□□□□ -1.21
USP48-206ENST00000464577 ADGRE1Q14246 886 aa7.52□□□□□ -1.21
USP48-206ENST00000464577 PCLAFQ15004 111 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms