RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 RAB27BO00194 218 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 INMTO95050 263 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 MBD4O95243 580 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 ANXA1P04083 346 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 A1BGP04217 495 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 POLBP06746 335 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 NHLRC4P0CG21 123 aaPredicted RBP4.71□□□□□ -1.66
VPS29-202ENST00000447578 KELP23276 732 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 CNTFP26441 200 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 COPAP53621 1224 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 POLE2P56282 527 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 FBXO47Q5MNV8 452 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 SUMO4Q6EEV6 95 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 SULT6B1Q6IMI4 303 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 KRT28Q7Z3Y7 464 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 FTSJ3Q8IY81 847 aaKnown RBP4.71□□□□□ -1.66
VPS29-202ENST00000447578 RAPGEF4Q8WZA2 1011 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 FKBP10Q96AY3 582 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 SH2D3AQ9BRG2 576 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 ACTRT3Q9BYD9 372 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 GPR35Q9HC97 309 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 TMEM8AQ9HCN3 771 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 RIC8AQ9NPQ8 531 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 VPS45Q9NRW7 570 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 SMC4Q9NTJ3 1288 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 ZSCAN32Q9NX65 697 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 XPR1Q9UBH6 696 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 FBXO2Q9UK22 296 aaPredicted RBP4.71□□□□□ -1.66
VPS29-202ENST00000447578 ARHGEF12Q9NZN5 1544 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 CCDC144AA2RUR9 1427 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 PLCH2O75038 1416 aa4.71□□□□□ -1.66
VPS29-202ENST00000447578 KDM5CP41229 1560 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 MAST1Q9Y2H9 1570 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 DHX29Q7Z478 1369 aaKnown RBP4.7□□□□□ -1.66
VPS29-202ENST00000447578 DYTNA2CJ06 578 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 M0QYG6 137 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 IKBKBO14920 756 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 SNX2O60749 519 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 LATS1O95835 1130 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 PDHA1P08559 390 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 ITGA5P08648 1049 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 CKMT1AP12532 417 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 XRCC6P12956 609 aaKnown RBP eCLIP4.7□□□□□ -1.66
VPS29-202ENST00000447578 JUPP14923 745 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 ZFXP17010 805 aaPredicted RBP4.7□□□□□ -1.66
VPS29-202ENST00000447578 XBP1P17861 261 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 CHRM3P20309 590 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 KRTAP5-9P26371 169 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 NDUFV1P49821 464 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 ZNF135P52742 658 aaPredicted RBP4.7□□□□□ -1.66
VPS29-202ENST00000447578 MAPKAPK3Q16644 382 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 ADCK5Q3MIX3 580 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 ARL6IP4Q66PJ3 421 aaKnown RBP4.7□□□□□ -1.66
VPS29-202ENST00000447578 FAAH2Q6GMR7 532 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 TANGO2Q6ICL3 276 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 TAF2Q6P1X5 1199 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 KLHL17Q6TDP4 642 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 ZDHHC24Q6UX98 284 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 YTHDF3Q7Z739 585 aaKnown RBP4.7□□□□□ -1.66
VPS29-202ENST00000447578 GATAD2AQ86YP4 633 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 ESX1Q8N693 406 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 STT3BQ8TCJ2 826 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 OTUD7AQ8TE49 926 aaPredicted RBP4.7□□□□□ -1.66
VPS29-202ENST00000447578 ASB12Q8WXK4 309 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 SCAMP4Q969E2 229 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 EID2BQ96D98 161 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 ZNF48Q96MX3 618 aaPredicted RBP4.7□□□□□ -1.66
VPS29-202ENST00000447578 KATNAL1Q9BW62 490 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 QTRT1Q9BXR0 403 aaKnown RBP4.7□□□□□ -1.66
VPS29-202ENST00000447578 SIK2Q9H0K1 926 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 UNC45AQ9H3U1 944 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 SAYSD1Q9NPB0 183 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 HEYLQ9NQ87 328 aaPredicted RBP4.7□□□□□ -1.66
VPS29-202ENST00000447578 ETAA1Q9NY74 926 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 GGA3Q9NZ52 723 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 HERC5Q9UII4 1024 aaKnown RBP4.7□□□□□ -1.66
VPS29-202ENST00000447578 SLC13A4Q9UKG4 626 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 ZMYND8Q9ULU4 1186 aaPredicted RBP4.7□□□□□ -1.66
VPS29-202ENST00000447578 AGAP1Q9UPQ3 857 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 TBC1D30Q9Y2I9 924 aa4.7□□□□□ -1.66
VPS29-202ENST00000447578 UHRF1BP1LA0JNW5 1464 aa4.69□□□□□ -1.66
VPS29-202ENST00000447578 CDC42BPBQ9Y5S2 1711 aa4.69□□□□□ -1.66
VPS29-202ENST00000447578 CLASP1Q7Z460 1538 aa4.69□□□□□ -1.66
VPS29-202ENST00000447578 HMX3A6NHT5 357 aa4.69□□□□□ -1.66
VPS29-202ENST00000447578 KCNQ3O43525 872 aa4.69□□□□□ -1.66
VPS29-202ENST00000447578 ASNA1O43681 348 aa4.69□□□□□ -1.66
VPS29-202ENST00000447578 TRIAP1O43715 76 aa4.69□□□□□ -1.66
VPS29-202ENST00000447578 VPS4BO75351 444 aa4.69□□□□□ -1.66
VPS29-202ENST00000447578 ITGA2BP08514 1039 aa4.69□□□□□ -1.66
VPS29-202ENST00000447578 PIM1P11309 404 aaPredicted RBP4.69□□□□□ -1.66
VPS29-202ENST00000447578 PCSK6P29122 969 aa4.69□□□□□ -1.66
VPS29-202ENST00000447578 EPHB2P29323 1055 aa4.69□□□□□ -1.66
VPS29-202ENST00000447578 ELF1P32519 619 aa4.69□□□□□ -1.66
VPS29-202ENST00000447578 EIF5P55010 431 aaKnown RBP4.69□□□□□ -1.66
VPS29-202ENST00000447578 MPP1Q00013 466 aa4.69□□□□□ -1.66
VPS29-202ENST00000447578 TBCCQ15814 346 aa4.69□□□□□ -1.66
VPS29-202ENST00000447578 GPR162Q16538 588 aa4.69□□□□□ -1.66
VPS29-202ENST00000447578 FAM110CQ1W6H9 321 aa4.69□□□□□ -1.66
VPS29-202ENST00000447578 PROSER3Q2NL68 480 aa4.69□□□□□ -1.66
VPS29-202ENST00000447578 RBM20Q5T481 1227 aaKnown RBP4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms