RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 TAB3Q8N5C8 712 aaPredicted RBP27.47■■□□□ 1.99
LDB1-202ENST00000425280 NAT8LQ8N9F0 302 aa27.47■■□□□ 1.99
LDB1-202ENST00000425280 TMEM109Q9BVC6 243 aa27.47■■□□□ 1.99
LDB1-202ENST00000425280 PRDM16Q9HAZ2 1276 aa27.47■■□□□ 1.99
LDB1-202ENST00000425280 ZNF638Q14966 1978 aaKnown RBP27.46■■□□□ 1.99
LDB1-202ENST00000425280 CREB3O43889 395 aa27.46■■□□□ 1.99
LDB1-202ENST00000425280 CXCR3P49682 368 aa27.46■■□□□ 1.99
LDB1-202ENST00000425280 XRCC4Q13426 336 aa27.46■■□□□ 1.99
LDB1-202ENST00000425280 LIN28BQ6ZN17 250 aaKnown RBP eCLIP27.46■■□□□ 1.99
LDB1-202ENST00000425280 DQX1Q8TE96 717 aaKnown RBP27.46■■□□□ 1.99
LDB1-202ENST00000425280 LRRN4Q8WUT4 740 aa27.46■■□□□ 1.99
LDB1-202ENST00000425280 TRIM62Q9BVG3 475 aa27.46■■□□□ 1.99
LDB1-202ENST00000425280 DTLQ9NZJ0 730 aa27.46■■□□□ 1.99
LDB1-202ENST00000425280 BCCIPQ9P287 314 aaKnown RBP eCLIP27.46■■□□□ 1.99
LDB1-202ENST00000425280 ATP11BQ9Y2G3 1177 aa27.46■■□□□ 1.99
LDB1-202ENST00000425280 PCDHB5Q9Y5E4 795 aa27.46■■□□□ 1.99
LDB1-202ENST00000425280 OR6C75A6NL08 312 aa27.45■■□□□ 1.99
LDB1-202ENST00000425280 MAGEA4P43358 317 aa27.45■■□□□ 1.99
LDB1-202ENST00000425280 YWHAGP61981 247 aaKnown RBP eCLIP27.45■■□□□ 1.99
LDB1-202ENST00000425280 VSTM1Q6UX27 236 aa27.45■■□□□ 1.99
LDB1-202ENST00000425280 TMEM173Q86WV6 379 aaPredicted RBP27.45■■□□□ 1.99
LDB1-202ENST00000425280 CDKL3Q8IVW4 592 aaPredicted RBP27.45■■□□□ 1.99
LDB1-202ENST00000425280 PKNOX2Q96KN3 472 aa27.45■■□□□ 1.99
LDB1-202ENST00000425280 SAYSD1Q9NPB0 183 aa27.45■■□□□ 1.99
LDB1-202ENST00000425280 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP27.45■■□□□ 1.98
LDB1-202ENST00000425280 FAM72CH0Y354 149 aa27.45■■□□□ 1.98
LDB1-202ENST00000425280 DNAJC21Q5F1R6 531 aaKnown RBP27.45■■□□□ 1.98
LDB1-202ENST00000425280 FAM72AQ5TYM5 149 aa27.45■■□□□ 1.98
LDB1-202ENST00000425280 FAM72DQ6L9T8 149 aa27.45■■□□□ 1.98
LDB1-202ENST00000425280 FAM72BQ86X60 149 aa27.45■■□□□ 1.98
LDB1-202ENST00000425280 LRRC43Q8N309 656 aa27.45■■□□□ 1.98
LDB1-202ENST00000425280 C8orf48Q96LL4 319 aa27.45■■□□□ 1.98
LDB1-202ENST00000425280 C9orf72Q96LT7 481 aa27.45■■□□□ 1.98
LDB1-202ENST00000425280 PGLYRP2Q96PD5 576 aa27.45■■□□□ 1.98
LDB1-202ENST00000425280 ZKSCAN7Q9P0L1 754 aaPredicted RBP27.45■■□□□ 1.98
LDB1-202ENST00000425280 EEF2KO00418 725 aaKnown RBP27.44■■□□□ 1.98
LDB1-202ENST00000425280 GPR15P49685 360 aa27.44■■□□□ 1.98
LDB1-202ENST00000425280 PGFP49763 221 aa27.44■■□□□ 1.98
LDB1-202ENST00000425280 GAD2Q05329 585 aa27.44■■□□□ 1.98
LDB1-202ENST00000425280 SEMA3BQ13214 749 aa27.44■■□□□ 1.98
LDB1-202ENST00000425280 DPYSQ14117 519 aa27.44■■□□□ 1.98
LDB1-202ENST00000425280 SLC45A4Q5BKX6 768 aa27.44■■□□□ 1.98
LDB1-202ENST00000425280 SDHAF4Q5VUM1 108 aa27.44■■□□□ 1.98
LDB1-202ENST00000425280 RFX8Q6ZV50 586 aa27.44■■□□□ 1.98
LDB1-202ENST00000425280 BCL7CQ8WUZ0 217 aaPredicted RBP27.44■■□□□ 1.98
LDB1-202ENST00000425280 VWCEQ96DN2 955 aa27.44■■□□□ 1.98
LDB1-202ENST00000425280 GOLGA8MH3BSY2 632 aa27.44■■□□□ 1.98
LDB1-202ENST00000425280 ELAVL2Q12926 359 aaKnown RBP27.44■■□□□ 1.98
LDB1-202ENST00000425280 DDR2Q16832 855 aa27.44■■□□□ 1.98
LDB1-202ENST00000425280 ARL13BQ3SXY8 428 aa27.44■■□□□ 1.98
LDB1-202ENST00000425280 FAM182AQ5T1J6 154 aa27.44■■□□□ 1.98
LDB1-202ENST00000425280 KCNT2Q6UVM3 1135 aa27.44■■□□□ 1.98
LDB1-202ENST00000425280 SCD5Q86SK9 330 aa27.44■■□□□ 1.98
LDB1-202ENST00000425280 CCDC33Q8N5R6 958 aa27.44■■□□□ 1.98
LDB1-202ENST00000425280 OLFM3Q96PB7 478 aa27.44■■□□□ 1.98
LDB1-202ENST00000425280 QKIQ96PU8 341 aaKnown RBP eCLIP27.44■■□□□ 1.98
LDB1-202ENST00000425280 WDCPQ9H6R7 721 aa27.44■■□□□ 1.98
LDB1-202ENST00000425280 ABCC13Q9NSE7 274 aa27.44■■□□□ 1.98
LDB1-202ENST00000425280 TCRBV7S3A2A0A539 114 aa27.43■■□□□ 1.98
LDB1-202ENST00000425280 UPP2O95045 317 aa27.43■■□□□ 1.98
LDB1-202ENST00000425280 IGLV3-25P01717 112 aa27.43■■□□□ 1.98
LDB1-202ENST00000425280 MAGEA11P43364 429 aa27.43■■□□□ 1.98
LDB1-202ENST00000425280 LMAN1P49257 510 aa27.43■■□□□ 1.98
LDB1-202ENST00000425280 BASP1P80723 227 aaKnown RBP27.43■■□□□ 1.98
LDB1-202ENST00000425280 RTP2Q5QGT7 225 aa27.43■■□□□ 1.98
LDB1-202ENST00000425280 ATAD1Q8NBU5 361 aa27.43■■□□□ 1.98
LDB1-202ENST00000425280 STKLD1Q8NE28 680 aa27.43■■□□□ 1.98
LDB1-202ENST00000425280 EPS8L3Q8TE67 593 aaKnown RBP27.43■■□□□ 1.98
LDB1-202ENST00000425280 PAK5Q9P286 719 aa27.43■■□□□ 1.98
LDB1-202ENST00000425280 NOVA2Q9UNW9 492 aaKnown RBP27.43■■□□□ 1.98
LDB1-202ENST00000425280 TLDC2A0PJX2 215 aa27.42■■□□□ 1.98
LDB1-202ENST00000425280 TRIM66O15016 1216 aa27.42■■□□□ 1.98
LDB1-202ENST00000425280 MFSD11O43934 449 aa27.42■■□□□ 1.98
LDB1-202ENST00000425280 DGKIO75912 1065 aa27.42■■□□□ 1.98
LDB1-202ENST00000425280 NR1D1P20393 614 aa27.42■■□□□ 1.98
LDB1-202ENST00000425280 BTBD8Q5XKL5 378 aa27.42■■□□□ 1.98
LDB1-202ENST00000425280 CNKSR3Q6P9H4 555 aa27.42■■□□□ 1.98
LDB1-202ENST00000425280 TTC9BQ8N6N2 239 aa27.42■■□□□ 1.98
LDB1-202ENST00000425280 TKTL2Q9H0I9 626 aa27.42■■□□□ 1.98
LDB1-202ENST00000425280 TMEM39AQ9NV64 488 aa27.42■■□□□ 1.98
LDB1-202ENST00000425280 MYO16Q9Y6X6 1858 aa27.42■■□□□ 1.98
LDB1-202ENST00000425280 SMIM23A6NLE4 172 aa27.42■■□□□ 1.98
LDB1-202ENST00000425280 TBC1D4O60343 1298 aa27.42■■□□□ 1.98
LDB1-202ENST00000425280 TMEM63AO94886 807 aa27.42■■□□□ 1.98
LDB1-202ENST00000425280 ACTN2P35609 894 aa27.42■■□□□ 1.98
LDB1-202ENST00000425280 ARPP19P56211 112 aa27.42■■□□□ 1.98
LDB1-202ENST00000425280 EIF4EBP2Q13542 120 aaPredicted RBP27.42■■□□□ 1.98
LDB1-202ENST00000425280 IKBKEQ14164 716 aa27.42■■□□□ 1.98
LDB1-202ENST00000425280 FASTKD3Q14CZ7 662 aaKnown RBP27.42■■□□□ 1.98
LDB1-202ENST00000425280 EMC10Q5UCC4 262 aa27.42■■□□□ 1.98
LDB1-202ENST00000425280 RSPO2Q6UXX9 243 aaPredicted RBP27.42■■□□□ 1.98
LDB1-202ENST00000425280 KDM7AQ6ZMT4 941 aa27.42■■□□□ 1.98
LDB1-202ENST00000425280 CENPUQ71F23 418 aa27.42■■□□□ 1.98
LDB1-202ENST00000425280 TAS1R1Q7RTX1 841 aa27.42■■□□□ 1.98
LDB1-202ENST00000425280 CROCCP2Q86T23 111 aa27.42■■□□□ 1.98
LDB1-202ENST00000425280 NUP93Q8N1F7 819 aa27.42■■□□□ 1.98
LDB1-202ENST00000425280 PGM2Q96G03 612 aa27.42■■□□□ 1.98
LDB1-202ENST00000425280 SMAPO00193 183 aa27.41■■□□□ 1.98
LDB1-202ENST00000425280 SKOR1P84550 965 aa27.41■■□□□ 1.98
LDB1-202ENST00000425280 HIF1AQ16665 826 aa27.41■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms