RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 PCDH19Q8TAB3 1148 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 N4BP2L2Q92802 583 aaPredicted RBP11.05□□□□□ -0.64
CUX1-205ENST00000425244 C18orf25Q96B23 403 aaPredicted RBP11.05□□□□□ -0.64
CUX1-205ENST00000425244 FAXDC2Q96IV6 333 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 ZMAT2Q96NC0 199 aaKnown RBP11.05□□□□□ -0.64
CUX1-205ENST00000425244 RAB3IPQ96QF0 476 aaPredicted RBP11.05□□□□□ -0.64
CUX1-205ENST00000425244 SNRNP25Q9BV90 132 aaKnown RBP11.05□□□□□ -0.64
CUX1-205ENST00000425244 PHACTR1Q9C0D0 580 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 VRTNQ9H8Y1 702 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 PCDH18Q9HCL0 1135 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 HESX1Q9UBX0 185 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 FETUBQ9UGM5 382 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 ZC3H7BQ9UGR2 993 aaKnown RBP11.05□□□□□ -0.64
CUX1-205ENST00000425244 ZFP69BQ9UJL9 534 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 MOXD2PA6NHM9 499 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 SMAPO00193 183 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 ANP32DO95626 131 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 IL4RP24394 825 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 SKIV2L2P42285 1042 aaKnown RBP11.05□□□□□ -0.64
CUX1-205ENST00000425244 ATXN1P54253 815 aaKnown RBP11.05□□□□□ -0.64
CUX1-205ENST00000425244 PRMT2P55345 433 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 YWHAZP63104 245 aaKnown RBP11.05□□□□□ -0.64
CUX1-205ENST00000425244 DCAF4L1Q3SXM0 396 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 PLEKHG4Q58EX7 1191 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 OLFML1Q6UWY5 402 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 LPPQ93052 612 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 UTP4Q969X6 686 aaKnown RBP11.05□□□□□ -0.64
CUX1-205ENST00000425244 ZFP42Q96MM3 310 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 TRIM56Q9BRZ2 755 aaKnown RBP11.05□□□□□ -0.64
CUX1-205ENST00000425244 MAGEB5Q9BZ81 275 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 SENP6Q9GZR1 1112 aaPredicted RBP11.05□□□□□ -0.64
CUX1-205ENST00000425244 IQCGQ9H095 443 aaKnown RBP11.05□□□□□ -0.64
CUX1-205ENST00000425244 USP29Q9HBJ7 922 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 SSU72Q9NP77 194 aaKnown RBP11.05□□□□□ -0.64
CUX1-205ENST00000425244 PAK5Q9P286 719 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 TUBGCP4Q9UGJ1 667 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 C2CD2Q9Y426 696 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 MAD1L1Q9Y6D9 718 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 TEX264Q9Y6I9 313 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 ANKRD33BA6NCL7 494 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 TRIM49D1C9J1S8 452 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 TM9SF1O15321 606 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 PQBP1O60828 265 aaKnown RBP11.05□□□□□ -0.64
CUX1-205ENST00000425244 PDGFRBP09619 1106 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 CCL5P13501 91 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 BGNP21810 368 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 ADORA2BP29275 332 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 GRM5P41594 1212 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 BOLA3Q53S33 107 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 CLEC4CQ8WTT0 213 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 SLC44A1Q8WWI5 657 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 ALKBH8Q96BT7 664 aaKnown RBP11.05□□□□□ -0.64
CUX1-205ENST00000425244 TSSK1BQ9BXA7 367 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 KLC2Q9H0B6 622 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 DHX35Q9H5Z1 703 aaKnown RBP11.05□□□□□ -0.64
CUX1-205ENST00000425244 GOLGA2P5Q9HBQ8 144 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 CACNG4Q9UBN1 327 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 PADI3Q9ULW8 664 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 IPPQ9Y573 584 aa11.05□□□□□ -0.64
CUX1-205ENST00000425244 CHADO15335 359 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 PAPSS1O43252 624 aaPredicted RBP11.04□□□□□ -0.64
CUX1-205ENST00000425244 ENDOD1O94919 500 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 LCP1P13796 627 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 DESP17661 470 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 SLC6A3Q01959 620 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 BMPR2Q13873 1038 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 PDK2Q15119 407 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 KCNV2Q8TDN2 545 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 NSMCE1Q8WV22 266 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 APOPT1Q96IL0 206 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 LRMDAQ9H2I8 198 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 DPEP3Q9H4B8 488 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 RANBP2P49792 3224 aaKnown RBP11.04□□□□□ -0.64
CUX1-205ENST00000425244 C2orf71A6NGG8 1288 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 A8MXQ7 604 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 CXorf49A8MYA2 514 aaPredicted RBP11.04□□□□□ -0.64
CUX1-205ENST00000425244 COPEO14579 308 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 DIAPH2O60879 1101 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 ATP5HO75947 161 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 CABYRO75952 493 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 ALADP13716 330 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 AFF1P51825 1210 aaKnown RBP11.04□□□□□ -0.64
CUX1-205ENST00000425244 NKX3-2P78367 333 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 GBE1Q04446 702 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 ZBTB16Q05516 673 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 KYAT1Q16773 422 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 LONP2Q86WA8 852 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 MIEF2Q96C03 454 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 TRIM55Q9BYV6 548 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 SLC13A1Q9BZW2 595 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 ETNK2Q9NVF9 386 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 NOP53Q9NZM5 478 aaKnown RBP11.04□□□□□ -0.64
CUX1-205ENST00000425244 KIAA1257Q9ULG3 409 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 NR2E3Q9Y5X4 410 aa11.04□□□□□ -0.64
CUX1-205ENST00000425244 CDH23Q9H251 3354 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.03□□□□□ -0.64
CUX1-205ENST00000425244 UGT1A9O60656 530 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 T-ENOLP0DO92 83 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 CKBP12277 381 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 CCDC130P13994 396 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms