RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 F13A1P00488 732 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 EPHX1P07099 455 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 GNSP15586 552 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 PFKFB1P16118 471 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 CSNK1EP49674 416 aaKnown RBP8.5□□□□□ -1.05
VIM-202ENST00000421459 GOLGA8FQ08AF8 430 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 GOLGA8DPQ0D2H9 430 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 ZNF423Q2M1K9 1284 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 COL28A1Q2UY09 1125 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 HLA-BQ31612 363 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 KCNT1Q5JUK3 1230 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 WDR45BQ5MNZ6 344 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 KLHDC10Q6PID8 442 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 CCNI2Q6ZMN8 369 aaPredicted RBP8.5□□□□□ -1.05
VIM-202ENST00000421459 CCDC186Q7Z3E2 898 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 RABEPKQ7Z6M1 372 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 PROSER1Q86XN7 944 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 RBBP8NLQ8NC74 664 aaPredicted RBP8.5□□□□□ -1.05
VIM-202ENST00000421459 SETD7Q8WTS6 366 aaKnown RBP8.5□□□□□ -1.05
VIM-202ENST00000421459 CYB5D2Q8WUJ1 264 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 HNRNPLLQ8WVV9 542 aaKnown RBP8.5□□□□□ -1.05
VIM-202ENST00000421459 ADAMTS14Q8WXS8 1223 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 DNASE2BQ8WZ79 361 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 TAF4BQ92750 862 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 FOXJ1Q92949 421 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 TATDN2Q93075 761 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 SIPA1Q96FS4 1042 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 HEXIM2Q96MH2 286 aaKnown RBP8.5□□□□□ -1.05
VIM-202ENST00000421459 ARID3AQ99856 593 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 DUSP16Q9BY84 665 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 BACH2Q9BYV9 841 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 CIPCQ9C0C6 399 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 MTG2Q9H4K7 406 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 FAM124BQ9H5Z6 455 aaPredicted RBP8.5□□□□□ -1.05
VIM-202ENST00000421459 C6orf106Q9H6K1 298 aaPredicted RBP8.5□□□□□ -1.05
VIM-202ENST00000421459 ELOVL2Q9NXB9 296 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 RCOR1Q9UKL0 485 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 PCOLCE2Q9UKZ9 415 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 BTBD3Q9Y2F9 522 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 FRMD4BQ9Y2L6 1034 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 SLC27A6Q9Y2P4 619 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 RAXQ9Y2V3 346 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 GPSM3Q9Y4H4 160 aa8.5□□□□□ -1.05
VIM-202ENST00000421459 ASCC3Q8N3C0 2202 aaKnown RBP8.5□□□□□ -1.05
VIM-202ENST00000421459 FAM149AA5PLN7 773 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 METTL12A8MUP2 240 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 IKBKBO14920 756 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 BCAT2O15382 392 aaPredicted RBP8.49□□□□□ -1.05
VIM-202ENST00000421459 ATXN1LP0C7T5 689 aaKnown RBP8.49□□□□□ -1.05
VIM-202ENST00000421459 RALAP11233 206 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 NR2F2P24468 414 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 ACSL1P33121 698 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 RDXP35241 583 aaKnown RBP8.49□□□□□ -1.05
VIM-202ENST00000421459 SGSHP51688 502 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 RAD23BP54727 409 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 SLC14A1Q13336 389 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 ENPP2Q13822 863 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 STARD3Q14849 445 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 BHLHA9Q7RTU4 235 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 METTL3Q86U44 580 aaKnown RBP8.49□□□□□ -1.05
VIM-202ENST00000421459 PIGZQ86VD9 579 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 ZC3H3Q8IXZ2 948 aaKnown RBP8.49□□□□□ -1.05
VIM-202ENST00000421459 FAM186BQ8IYM0 893 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 SLC4A11Q8NBS3 891 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 C1orf216Q8TAB5 229 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 DDI1Q8WTU0 396 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 TMEM174Q8WUU8 243 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 SNX19Q92543 992 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 EDEM1Q92611 657 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 PRCCQ92733 491 aaPredicted RBP8.49□□□□□ -1.05
VIM-202ENST00000421459 CRELD1Q96HD1 420 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 NIF3L1Q9GZT8 377 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 CYP3A43Q9HB55 503 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 TM7SF3Q9NS93 570 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 TOR4AQ9NXH8 423 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 MARCH2Q9P0N8 246 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 SUSD2Q9UGT4 822 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 SFMBT1Q9UHJ3 866 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.49□□□□□ -1.05
VIM-202ENST00000421459 BPTFQ12830 3046 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 ZFYVE26Q68DK2 2539 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 CACNA1GO43497 2377 aa8.49□□□□□ -1.05
VIM-202ENST00000421459 GOLGA6L7A0A1B0GV03 622 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 PIK3R2O00459 728 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 CALUO43852 315 aaPredicted RBP8.48□□□□□ -1.05
VIM-202ENST00000421459 CALCAP01258 141 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 ACADMP11310 421 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 HLA-FP30511 346 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 CHKAP35790 457 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 MATKP42679 507 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 TKTL1P51854 596 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 NDUFA8P51970 172 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 CLDN6P56747 220 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 YWHAGP61981 247 aaKnown RBP eCLIP8.48□□□□□ -1.05
VIM-202ENST00000421459 COG7P83436 770 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 IL9RQ01113 521 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 ADAM9Q13443 819 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 KIF19Q2TAC6 998 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 GOLGA7BQ2TAP0 167 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 SOWAHCQ53LP3 525 aaPredicted RBP8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms