RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 SLC39A10Q9ULF5 831 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 L1RE1Q9UN81 338 aa12.32□□□□□ -0.44
PTPRF-205ENST00000414879 XPO1O14980 1071 aaKnown RBP12.31□□□□□ -0.44
PTPRF-205ENST00000414879 MEFVO15553 781 aaPredicted RBP12.31□□□□□ -0.44
PTPRF-205ENST00000414879 GLP2RO95838 553 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 CCNE2O96020 404 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 SCNN1GP51170 649 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 PARP6Q2NL67 630 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 BRMS1LQ5PSV4 323 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 SLC26A7Q8TE54 656 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 RCOR3Q9P2K3 495 aaPredicted RBP12.31□□□□□ -0.44
PTPRF-205ENST00000414879 AFF4Q9UHB7 1163 aaKnown RBP12.31□□□□□ -0.44
PTPRF-205ENST00000414879 ZNF112Q9UJU3 913 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 RWDD3Q9Y3V2 267 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 WNK3Q9BYP7 1800 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 SUPT3HB4E1H0 165 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 IGSF6O95976 241 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 KITP10721 976 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 PGAM1P18669 254 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 GRTP1Q5TC63 336 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 PDPK2PQ6A1A2 396 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 VSTM1Q6UX27 236 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 DPF3Q92784 378 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 VANGL2Q9ULK5 521 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 ANKRD6Q9Y2G4 727 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 E5RJQ4 531 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 CSDE1O75534 798 aaKnown RBP12.31□□□□□ -0.44
PTPRF-205ENST00000414879 SRP72O76094 671 aaKnown RBP12.31□□□□□ -0.44
PTPRF-205ENST00000414879 NFICP08651 508 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 CHKAP35790 457 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 MLH1P40692 756 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 PLA2G4AP47712 749 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 TUBP50607 506 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 SLC39A12Q504Y0 691 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 ERAP2Q6P179 960 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 LVRNQ6Q4G3 990 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 ANGPTL8Q6UXH0 198 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 KDELC2Q7Z4H8 507 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 PGBD3Q8N328 593 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 ACOT9Q9Y305 439 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 RBAK-RBAKDNI3L0D1 243 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 DAB1O75553 588 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 ADH1AP07327 375 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 CYP2A6P11509 494 aaPredicted RBP12.31□□□□□ -0.44
PTPRF-205ENST00000414879 KDELR1P24390 212 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 GRK4P32298 578 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 LSP1P33241 339 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 GUCY1A3Q02108 690 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 KCNMA1Q12791 1236 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 MAMLD1Q13495 774 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 ITGA7Q13683 1181 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 HECTD3Q5T447 861 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 TRIM68Q6AZZ1 485 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 PSTKQ8IV42 348 aaKnown RBP12.31□□□□□ -0.44
PTPRF-205ENST00000414879 MYO1HQ8N1T3 1032 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 ZNF473Q8WTR7 871 aaKnown RBP12.31□□□□□ -0.44
PTPRF-205ENST00000414879 OSCP1Q8WVF1 389 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 MAGEB18Q96M61 343 aa12.31□□□□□ -0.44
PTPRF-205ENST00000414879 ZNF214Q9UL59 606 aaPredicted RBP12.31□□□□□ -0.44
PTPRF-205ENST00000414879 SELPP16109 830 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 LAG3P18627 525 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 BMP6P22004 513 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 STX5Q13190 355 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 MPP3Q13368 585 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 C4orf33Q8N1A6 199 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 PIP4K2CQ8TBX8 421 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 BLOC1S5Q8TDH9 187 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 ULBP1Q9BZM6 244 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 TMBIM4Q9HC24 238 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 CASS4Q9NQ75 786 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 MARCH2Q9P0N8 246 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 DNMT3LQ9UJW3 386 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.3□□□□□ -0.44
PTPRF-205ENST00000414879 FRMD3A2A2Y4 597 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 H3BMM5 538 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 CHADO15335 359 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 ARF4P18085 180 aaPredicted RBP12.3□□□□□ -0.44
PTPRF-205ENST00000414879 CRABP2P29373 138 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 KCNA1Q09470 495 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 CAPRIN1Q14444 709 aaKnown RBP12.3□□□□□ -0.44
PTPRF-205ENST00000414879 STARD3Q14849 445 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 UGCGQ16739 394 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 SLC24A5Q71RS6 500 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 STK40Q8N2I9 435 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 FBXO25Q8TCJ0 367 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 C2orf49Q9BVC5 232 aaPredicted RBP12.3□□□□□ -0.44
PTPRF-205ENST00000414879 CDC42EP4Q9H3Q1 356 aaKnown RBP12.3□□□□□ -0.44
PTPRF-205ENST00000414879 DNAJC18Q9H819 358 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 ECT2Q9H8V3 914 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 ADA2Q9NZK5 511 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 FAM153AQ9UHL3 310 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 TMCO1Q9UM00 188 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 GP5P40197 560 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 ANXA11P50995 505 aaKnown RBP12.3□□□□□ -0.44
PTPRF-205ENST00000414879 CDH8P55286 799 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 NOMO3P69849 1222 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 POU4F1Q01851 419 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 NAA30Q147X3 362 aaPredicted RBP12.3□□□□□ -0.44
PTPRF-205ENST00000414879 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.3□□□□□ -0.44
PTPRF-205ENST00000414879 OOSP2Q86WS3 158 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms