RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 BLOC1S5Q8TDH9 187 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 C9orf72Q96LT7 481 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 NSMCE2Q96MF7 247 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 TMEM117Q9H0C3 514 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 REEP1Q9H902 201 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 KDM5DQ9BY66 1539 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 EDC4Q6P2E9 1401 aaKnown RBP13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 ACSL4O60488 711 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 RBP1P09455 135 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 ARHGAP15Q53QZ3 475 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 CHRDL2Q6WN34 429 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 COL23A1Q86Y22 540 aaPredicted RBP13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 POC5Q8NA72 575 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 SLC38A7Q9NVC3 462 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 RPS6KA6Q9UK32 745 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 LEMD3Q9Y2U8 911 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 MAST1Q9Y2H9 1570 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 HSD17B3P37058 310 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 DCAF6Q58WW2 860 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 MMADHCQ9H3L0 296 aaPredicted RBP13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 KIAA0391O15091 583 aaKnown RBP13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 RAG1P15918 1043 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 IFNAR1P17181 557 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 PTPN4P29074 926 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 CDC42EP1Q00587 391 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 EYA1Q99502 592 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 TDRD1Q9BXT4 1180 aaKnown RBP13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 FEM1BQ9UK73 627 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 ERGIC3Q9Y282 383 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 HBS1LQ9Y450 684 aaKnown RBP13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 ZBTB5O15062 677 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 CYP26A1O43174 497 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 PLA2G6O60733 806 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 NOS1APO75052 506 aaPredicted RBP13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 PDGFRAP16234 1089 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 RPL9P32969 192 aaKnown RBP13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 ALDH1A3P47895 512 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 PLD1Q13393 1074 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 SLC18A3Q16572 532 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 SLC30A5Q8TAD4 765 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 ZNF285Q96NJ3 590 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 PLEKHG4BQ96PX9 1271 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 TMEM120AQ9BXJ8 343 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 UBP1Q9NZI7 540 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 MRPS7Q9Y2R9 242 aaKnown RBP13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 IFRD1O00458 451 aaPredicted RBP13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 IRAK1P51617 712 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 CYP20A1Q6UW02 462 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 KBTBD2Q8IY47 623 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 FANCAO15360 1455 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 A0A1W2PP64 1363 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 ARFIP1P53367 373 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 MYBPC3Q14896 1274 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 PSMD5Q16401 504 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 SMTNL2Q2TAL5 461 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 AGKQ53H12 422 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 BROXQ5VW32 411 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 KDM7AQ6ZMT4 941 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 WDR24Q96S15 920 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 SEPT5Q99719 369 aaPredicted RBP13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 AIF1LQ9BQI0 150 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 NR6A1Q15406 480 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 RPS6KL1Q9Y6S9 549 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 NPY2RP49146 381 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 MYBPC1Q00872 1141 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 FRMD8P1Q9BZ68 369 aaPredicted RBP13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 SERPINA1P01009 418 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 RARBP10826 455 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 PAX7P23759 505 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 GSTT1P30711 240 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 CDC42P60953 191 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 ZNF613Q6PF04 617 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 RP9Q8TA86 221 aaKnown RBP13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 TEKT5Q96M29 485 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 RNF145Q96MT1 663 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 GIT1Q9Y2X7 761 aa13.65□□□□□ -0.22
CCDC88A-204ENST00000413716 SMU1Q2TAY7 513 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 POTEGQ6S5H5 508 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 ZSCAN18Q8TBC5 510 aaPredicted RBP13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 DHRS7Q9Y394 339 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 KIAA0232Q92628 1395 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 TTC26A0AVF1 554 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 UBDO15205 165 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 AP3S2P59780 193 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 ITFG1Q8TB96 612 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 RIN2Q8WYP3 895 aaPredicted RBP13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 TOR4AQ9NXH8 423 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 LIMD1Q9UGP4 676 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 GRIP1Q9Y3R0 1128 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 TELO2Q9Y4R8 837 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 SDR42E2A6NKP2 422 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 IFNA6P05013 189 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 MAGEA12P43365 314 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 MTAPQ13126 283 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 BHLHB9Q6PI77 547 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 JAMLQ86YT9 394 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 ACTRT2Q8TDY3 377 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 MAP4K1Q92918 833 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 CCDC86Q9H6F5 360 aaKnown RBP13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 PDGFCQ9NRA1 345 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms