RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 NME3Q13232 169 aa30.54■■■□□ 2.48
USP42-202ENST00000404008 CC2D1AQ6P1N0 951 aaPredicted RBP30.54■■■□□ 2.48
USP42-202ENST00000404008 FCRL2Q96LA5 508 aaPredicted RBP30.54■■■□□ 2.48
USP42-202ENST00000404008 NUP85Q9BW27 656 aa30.54■■■□□ 2.48
USP42-202ENST00000404008 COL4A2P08572 1712 aa30.54■■■□□ 2.48
USP42-202ENST00000404008 TICRRQ7Z2Z1 1910 aa30.54■■■□□ 2.48
USP42-202ENST00000404008 SYNJ2BP-COX16A0A087WUM0 186 aa30.54■■■□□ 2.48
USP42-202ENST00000404008 SCAMP3O14828 347 aaKnown RBP30.54■■■□□ 2.48
USP42-202ENST00000404008 IPO7O95373 1038 aaKnown RBP30.54■■■□□ 2.48
USP42-202ENST00000404008 KLKB1P03952 638 aa30.54■■■□□ 2.48
USP42-202ENST00000404008 CORO1AP31146 461 aaKnown RBP30.54■■■□□ 2.48
USP42-202ENST00000404008 GDI1P31150 447 aa30.54■■■□□ 2.48
USP42-202ENST00000404008 OGDHQ02218 1023 aa30.54■■■□□ 2.48
USP42-202ENST00000404008 C15orf59Q2T9L4 293 aaPredicted RBP30.54■■■□□ 2.48
USP42-202ENST00000404008 ARHGAP29Q52LW3 1261 aa30.54■■■□□ 2.48
USP42-202ENST00000404008 Q6ZNB5 142 aa30.54■■■□□ 2.48
USP42-202ENST00000404008 OSCP1Q8WVF1 389 aa30.54■■■□□ 2.48
USP42-202ENST00000404008 ASIC4Q96FT7 647 aa30.54■■■□□ 2.48
USP42-202ENST00000404008 TRIM7Q9C029 511 aa30.54■■■□□ 2.48
USP42-202ENST00000404008 DCLK3Q9C098 648 aa30.54■■■□□ 2.48
USP42-202ENST00000404008 LUC7LQ9NQ29 371 aaKnown RBP30.54■■■□□ 2.48
USP42-202ENST00000404008 PIGVQ9NUD9 493 aa30.54■■■□□ 2.48
USP42-202ENST00000404008 COX16Q9P0S2 106 aa30.54■■■□□ 2.48
USP42-202ENST00000404008 SORCS3Q9UPU3 1222 aa30.54■■■□□ 2.48
USP42-202ENST00000404008 REXO2Q9Y3B8 237 aaKnown RBP30.54■■■□□ 2.48
USP42-202ENST00000404008 BDP1A6H8Y1 2624 aa30.53■■■□□ 2.48
USP42-202ENST00000404008 CHADO15335 359 aa30.53■■■□□ 2.48
USP42-202ENST00000404008 ENDOD1O94919 500 aa30.53■■■□□ 2.48
USP42-202ENST00000404008 HARS2P49590 506 aaKnown RBP30.53■■■□□ 2.48
USP42-202ENST00000404008 ATP11AP98196 1134 aa30.53■■■□□ 2.48
USP42-202ENST00000404008 NUGGCQ68CJ6 796 aa30.53■■■□□ 2.48
USP42-202ENST00000404008 CENPIQ92674 756 aaPredicted RBP30.53■■■□□ 2.48
USP42-202ENST00000404008 ZFYVE19Q96K21 471 aa30.53■■■□□ 2.48
USP42-202ENST00000404008 FAM83CQ9BQN1 747 aa30.53■■■□□ 2.48
USP42-202ENST00000404008 WNT6Q9Y6F9 365 aa30.53■■■□□ 2.48
USP42-202ENST00000404008 MUC3AQ02505 3323 aa30.53■■■□□ 2.48
USP42-202ENST00000404008 F9P00740 461 aa30.52■■■□□ 2.48
USP42-202ENST00000404008 CCZ1BP86790 482 aa30.52■■■□□ 2.48
USP42-202ENST00000404008 CCZ1P86791 482 aaPredicted RBP30.52■■■□□ 2.48
USP42-202ENST00000404008 DEUP1Q05D60 604 aa30.52■■■□□ 2.48
USP42-202ENST00000404008 UNC45BQ8IWX7 931 aa30.52■■■□□ 2.48
USP42-202ENST00000404008 BBS7Q8IWZ6 715 aa30.52■■■□□ 2.48
USP42-202ENST00000404008 ACRBPQ8NEB7 543 aa30.52■■■□□ 2.48
USP42-202ENST00000404008 FNIP1Q8TF40 1166 aa30.52■■■□□ 2.48
USP42-202ENST00000404008 CNPY3Q9BT09 278 aa30.52■■■□□ 2.48
USP42-202ENST00000404008 TMEM51Q9NW97 253 aa30.52■■■□□ 2.48
USP42-202ENST00000404008 DUS2Q9NX74 493 aaKnown RBP30.52■■■□□ 2.48
USP42-202ENST00000404008 UVRAGQ9P2Y5 699 aa30.52■■■□□ 2.48
USP42-202ENST00000404008 ARNTLO00327 626 aa30.51■■■□□ 2.47
USP42-202ENST00000404008 SLC9A3R1O14745 358 aaPredicted RBP30.51■■■□□ 2.47
USP42-202ENST00000404008 ARHGAP6O43182 974 aa30.51■■■□□ 2.47
USP42-202ENST00000404008 CCP110O43303 1012 aa30.51■■■□□ 2.47
USP42-202ENST00000404008 NARSO43776 548 aaKnown RBP30.51■■■□□ 2.47
USP42-202ENST00000404008 RDXP35241 583 aaKnown RBP30.51■■■□□ 2.47
USP42-202ENST00000404008 CXCR3P49682 368 aa30.51■■■□□ 2.47
USP42-202ENST00000404008 ZNF252P-AS1Q0IIN9 211 aa30.51■■■□□ 2.47
USP42-202ENST00000404008 CDO1Q16878 200 aa30.51■■■□□ 2.47
USP42-202ENST00000404008 ZC3H12AQ5D1E8 599 aaKnown RBP30.51■■■□□ 2.47
USP42-202ENST00000404008 SH3PXD2AQ5TCZ1 1133 aa30.51■■■□□ 2.47
USP42-202ENST00000404008 STRADAQ7RTN6 431 aa30.51■■■□□ 2.47
USP42-202ENST00000404008 DENND1CQ8IV53 801 aa30.51■■■□□ 2.47
USP42-202ENST00000404008 BRD9Q9H8M2 597 aa30.51■■■□□ 2.47
USP42-202ENST00000404008 SLTMQ9NWH9 1034 aaKnown RBP eCLIP30.51■■■□□ 2.47
USP42-202ENST00000404008 CTTNBP2NLQ9P2B4 639 aa30.51■■■□□ 2.47
USP42-202ENST00000404008 TBC1D14Q9P2M4 693 aa30.51■■■□□ 2.47
USP42-202ENST00000404008 AGO1Q9UL18 857 aaKnown RBP30.51■■■□□ 2.47
USP42-202ENST00000404008 DUSP12Q9UNI6 340 aa30.51■■■□□ 2.47
USP42-202ENST00000404008 ZNF510Q9Y2H8 683 aa30.51■■■□□ 2.47
USP42-202ENST00000404008 SRFP11831 508 aa30.5■■■□□ 2.47
USP42-202ENST00000404008 CCR1P32246 355 aa30.5■■■□□ 2.47
USP42-202ENST00000404008 IFNAR2P48551 515 aa30.5■■■□□ 2.47
USP42-202ENST00000404008 ATXN1P54253 815 aaKnown RBP30.5■■■□□ 2.47
USP42-202ENST00000404008 PPP2R5DQ14738 602 aa30.5■■■□□ 2.47
USP42-202ENST00000404008 PDGFRLQ15198 375 aa30.5■■■□□ 2.47
USP42-202ENST00000404008 TRIM68Q6AZZ1 485 aa30.5■■■□□ 2.47
USP42-202ENST00000404008 SND1Q7KZF4 910 aaKnown RBP eCLIP30.5■■■□□ 2.47
USP42-202ENST00000404008 ZNF564Q8TBZ8 553 aaPredicted RBP30.5■■■□□ 2.47
USP42-202ENST00000404008 FAM172AQ8WUF8 416 aa30.5■■■□□ 2.47
USP42-202ENST00000404008 LINC00597Q9H2U6 94 aa30.5■■■□□ 2.47
USP42-202ENST00000404008 ANAPC7Q9UJX3 599 aa30.5■■■□□ 2.47
USP42-202ENST00000404008 KCNU1A8MYU2 1149 aa30.49■■■□□ 2.47
USP42-202ENST00000404008 PTMAP06454 111 aaKnown RBP30.49■■■□□ 2.47
USP42-202ENST00000404008 SLC2A3P11169 496 aa30.49■■■□□ 2.47
USP42-202ENST00000404008 PSMA2P25787 234 aa30.49■■■□□ 2.47
USP42-202ENST00000404008 EML3Q32P44 896 aa30.49■■■□□ 2.47
USP42-202ENST00000404008 RAB6CQ53S08 254 aa30.49■■■□□ 2.47
USP42-202ENST00000404008 IRF7Q92985 503 aa30.49■■■□□ 2.47
USP42-202ENST00000404008 RNF34Q969K3 372 aa30.49■■■□□ 2.47
USP42-202ENST00000404008 AZIN2Q96A70 460 aa30.49■■■□□ 2.47
USP42-202ENST00000404008 OTUB2Q96DC9 234 aa30.49■■■□□ 2.47
USP42-202ENST00000404008 DESI2Q9BSY9 194 aa30.49■■■□□ 2.47
USP42-202ENST00000404008 RAB6CQ9H0N0 254 aa30.49■■■□□ 2.47
USP42-202ENST00000404008 SLC2A4RGQ9NR83 387 aa30.49■■■□□ 2.47
USP42-202ENST00000404008 MUTYHQ9UIF7 546 aa30.49■■■□□ 2.47
USP42-202ENST00000404008 COL4A3Q01955 1670 aa30.49■■■□□ 2.47
USP42-202ENST00000404008 LATS1O95835 1130 aa30.48■■■□□ 2.47
USP42-202ENST00000404008 APOEP02649 317 aa30.48■■■□□ 2.47
USP42-202ENST00000404008 HDAC4P56524 1084 aa30.48■■■□□ 2.47
USP42-202ENST00000404008 KRT83P78385 493 aa30.48■■■□□ 2.47
USP42-202ENST00000404008 CCDC173Q0VFZ6 552 aa30.48■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms