RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 DAPP1Q9UN19 280 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 NAALADL1Q9UQQ1 740 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 DNAJC16Q9Y2G8 782 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 FAM169AQ9Y6X4 670 aa4.44□□□□□ -1.7
HMGB1-204ENST00000399489 PTGES3LE9PB15 166 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 CAPN9O14815 690 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 PCDH17O14917 1159 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 FAM20BO75063 409 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 USP1O94782 785 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 SLU7O95391 586 aaKnown RBP4.43□□□□□ -1.7
HMGB1-204ENST00000399489 ABHD16AO95870 558 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 AHSGP02765 367 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 FTH1P19P0C7X4 201 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 PSMA4P25789 261 aaKnown RBP4.43□□□□□ -1.7
HMGB1-204ENST00000399489 KIR2DL3P43628 341 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 SOX8P57073 446 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 AIMP1Q12904 312 aaKnown RBP4.43□□□□□ -1.7
HMGB1-204ENST00000399489 MPP3Q13368 585 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 KCNB1Q14721 858 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 COG2Q14746 738 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 RAB39AQ14964 217 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 ANKRD1Q15327 319 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 TRIM71Q2Q1W2 868 aaKnown RBP4.43□□□□□ -1.7
HMGB1-204ENST00000399489 PRICKLE4Q2TBC4 344 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 TMTC4Q5T4D3 741 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 CCDC73Q6ZRK6 1079 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 RRAGAQ7L523 313 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 ZNF804AQ7Z570 1209 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 ELOA2Q8IYF1 753 aaPredicted RBP4.43□□□□□ -1.7
HMGB1-204ENST00000399489 DCBLD1Q8N8Z6 715 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 USP38Q8NB14 1042 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 CCDC150Q8NCX0 1101 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 MDGA1Q8NFP4 955 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 SPATA18Q8TC71 538 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 IFI44Q8TCB0 444 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 PIGOQ8TEQ8 1089 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 SLC22A17Q8WUG5 538 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 ST8SIA2Q92186 375 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 CUL5Q93034 780 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 LENG9Q96B70 501 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 CEP95Q96GE4 821 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 RBM18Q96H35 190 aaKnown RBP4.43□□□□□ -1.7
HMGB1-204ENST00000399489 ACAT2Q9BWD1 397 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 ZNF518BQ9C0D4 1074 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 MRPL46Q9H2W6 279 aaKnown RBP4.43□□□□□ -1.7
HMGB1-204ENST00000399489 NDST4Q9H3R1 872 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 COMMD8Q9NX08 183 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 POGKQ9P215 609 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 RGS17Q9UGC6 210 aaPredicted RBP4.43□□□□□ -1.7
HMGB1-204ENST00000399489 AJAP1Q9UKB5 411 aaPredicted RBP4.43□□□□□ -1.7
HMGB1-204ENST00000399489 PCDHB6Q9Y5E3 794 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 IKBKGQ9Y6K9 419 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 UNC13AQ9UPW8 1703 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 VWA3AA6NCI4 1184 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 PYCARD-AS1I3L0S3 204 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 DDX39AO00148 427 aaKnown RBP4.43□□□□□ -1.7
HMGB1-204ENST00000399489 ADAM20O43506 726 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 GLP2RO95838 553 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 AFPP02771 609 aaKnown RBP4.43□□□□□ -1.7
HMGB1-204ENST00000399489 TBXAS1P24557 533 aaPredicted RBP4.43□□□□□ -1.7
HMGB1-204ENST00000399489 PRDX5P30044 214 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 PSMC2P35998 433 aaKnown RBP4.43□□□□□ -1.7
HMGB1-204ENST00000399489 THPOP40225 353 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 PSMB10P40306 273 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 SSR1P43307 286 aaKnown RBP4.43□□□□□ -1.7
HMGB1-204ENST00000399489 GPR15P49685 360 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 MCM2P49736 904 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 ZNF41P51814 821 aaPredicted RBP4.43□□□□□ -1.7
HMGB1-204ENST00000399489 BCAT1P54687 386 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 ADAM8P78325 824 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 IRX3P78415 501 aaPredicted RBP4.43□□□□□ -1.7
HMGB1-204ENST00000399489 SLC25A3Q00325 362 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 DDR1Q08345 913 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 PRPF4BQ13523 1007 aaKnown RBP4.43□□□□□ -1.7
HMGB1-204ENST00000399489 SLMAPQ14BN4 828 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 BMP2KLQ5H9B9 411 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 DCAF17Q5H9S7 520 aaPredicted RBP4.43□□□□□ -1.7
HMGB1-204ENST00000399489 TTC22Q5TAA0 569 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 ATPAF1Q5TC12 328 aaPredicted RBP4.43□□□□□ -1.7
HMGB1-204ENST00000399489 MEX3CQ5U5Q3 659 aaKnown RBP4.43□□□□□ -1.7
HMGB1-204ENST00000399489 C11orf88Q6PI97 169 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 KLHL24Q6TFL4 600 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 ATF7IPQ6VMQ6 1270 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 KIAA0408Q6ZU52 694 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 KRT28Q7Z3Y7 464 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 PIWIL3Q7Z3Z3 882 aaKnown RBP4.43□□□□□ -1.7
HMGB1-204ENST00000399489 FAM90A1Q86YD7 464 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 C17orf53Q8N3J3 647 aaPredicted RBP4.43□□□□□ -1.7
HMGB1-204ENST00000399489 CDYL2Q8N8U2 506 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 TAF4BQ92750 862 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 PTP4A1Q93096 173 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 KTI12Q96EK9 354 aaPredicted RBP4.43□□□□□ -1.7
HMGB1-204ENST00000399489 NOL10Q9BSC4 688 aaKnown RBP4.43□□□□□ -1.7
HMGB1-204ENST00000399489 FSD1Q9BTV5 496 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 DNAI2Q9GZS0 605 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 PDCL3Q9H2J4 239 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 TBC1D23Q9NUY8 699 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 TBCCD1Q9NVR7 557 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 CALCOCO1Q9P1Z2 691 aa4.43□□□□□ -1.7
HMGB1-204ENST00000399489 DTNAQ9Y4J8 743 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms