RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 ING4Q9UNL4 249 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 SSNA1O43805 119 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 CYP11B1P15538 503 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 ELK3P41970 407 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 CREG2Q8IUH2 290 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 NEDD1Q8NHV4 660 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 C17orf50Q8WW18 174 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 PCDHGA3Q9Y5H0 932 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 RAD54BQ9Y620 910 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 NCOA3Q9Y6Q9 1424 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 REREQ9P2R6 1566 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 USP42Q9H9J4 1324 aaKnown RBP12.15□□□□□ -0.46
SYNPO-202ENST00000394243 EXTL3O43909 919 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 IFNA14P01570 189 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 ATP5BP06576 529 aaKnown RBP12.15□□□□□ -0.46
SYNPO-202ENST00000394243 ZNF37AP17032 561 aaPredicted RBP12.15□□□□□ -0.46
SYNPO-202ENST00000394243 PLA2G4FQ68DD2 849 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 ABRAXAS1Q6UWZ7 409 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 DGCR14Q96DF8 476 aaKnown RBP12.15□□□□□ -0.46
SYNPO-202ENST00000394243 GPAMQ9HCL2 828 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 AGPAT3Q9NRZ7 376 aa12.15□□□□□ -0.46
SYNPO-202ENST00000394243 SHBGP04278 402 aa12.15□□□□□ -0.47
SYNPO-202ENST00000394243 FXR2P51116 673 aaKnown RBP eCLIP12.15□□□□□ -0.47
SYNPO-202ENST00000394243 SPIRE1Q08AE8 756 aa12.15□□□□□ -0.47
SYNPO-202ENST00000394243 PYDC2Q56P42 97 aa12.15□□□□□ -0.47
SYNPO-202ENST00000394243 MACC1Q6ZN28 852 aa12.15□□□□□ -0.47
SYNPO-202ENST00000394243 PCDH20Q8N6Y1 951 aaKnown RBP12.15□□□□□ -0.47
SYNPO-202ENST00000394243 MAP3K14Q99558 947 aa12.15□□□□□ -0.47
SYNPO-202ENST00000394243 NUDT12Q9BQG2 462 aa12.15□□□□□ -0.47
SYNPO-202ENST00000394243 SLC7A5P2Q9GIP4 190 aa12.15□□□□□ -0.47
SYNPO-202ENST00000394243 NIF3L1Q9GZT8 377 aa12.15□□□□□ -0.47
SYNPO-202ENST00000394243 WDR41Q9HAD4 459 aa12.15□□□□□ -0.47
SYNPO-202ENST00000394243 EME2A4GXA9 379 aaPredicted RBP12.14□□□□□ -0.47
SYNPO-202ENST00000394243 CUL2Q13617 745 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 TRIM74Q86UV6 250 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 TRIM73Q86UV7 250 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 SLC22A9Q8IVM8 553 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 MRPL48Q96GC5 212 aaKnown RBP12.14□□□□□ -0.47
SYNPO-202ENST00000394243 SEMA6BQ9H3T3 888 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 CRNNQ9UBG3 495 aaPredicted RBP12.14□□□□□ -0.47
SYNPO-202ENST00000394243 PSMD11O00231 422 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 CAMTA2O94983 1202 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 FYNP06241 537 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 NCAM1P13591 858 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 ETS1P14921 441 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 DRD4P21917 467 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 GPC1P35052 558 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 TIMM50Q3ZCQ8 353 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 TLR10Q9BXR5 811 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 DCLK3Q9C098 648 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 TRMT13Q9NUP7 481 aaKnown RBP12.14□□□□□ -0.47
SYNPO-202ENST00000394243 NMRK1Q9NWW6 199 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 H3BN98 237 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 ALADP13716 330 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 SLC2A4P14672 509 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 ADSSP30520 456 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 LRPAP1P30533 357 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 TOP3AQ13472 1001 aaPredicted RBP12.14□□□□□ -0.47
SYNPO-202ENST00000394243 CDKAL1Q5VV42 579 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 RTKN2Q8IZC4 609 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 CCDC59Q9P031 241 aaKnown RBP12.14□□□□□ -0.47
SYNPO-202ENST00000394243 SRP68Q9UHB9 627 aaKnown RBP12.14□□□□□ -0.47
SYNPO-202ENST00000394243 TMCO1Q9UM00 188 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 ATXN2Q99700 1313 aaKnown RBP12.14□□□□□ -0.47
SYNPO-202ENST00000394243 S100A6P06703 90 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 RRM1P23921 792 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 MAPKAPK2P49137 400 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 C16orf62Q7Z3J2 963 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 PARP8Q8N3A8 854 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 PACSIN3Q9UKS6 424 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 PCDHB8Q9UN66 801 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 VPS9D1Q9Y2B5 631 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 ARHGEF7Q14155 803 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 SLC47A2Q86VL8 602 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 FAM237BA0A1B0GVD1 139 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 MGAT4DA6NG13 374 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 ERI2A8K979 691 aaKnown RBP12.14□□□□□ -0.47
SYNPO-202ENST00000394243 APBA3O96018 575 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 ALOX5P09917 674 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 RFX3P48380 749 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 GEMP55040 296 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 FAAP100Q0VG06 881 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.14□□□□□ -0.47
SYNPO-202ENST00000394243 SLC20A1Q8WUM9 679 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 PPP1R14AQ96A00 147 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 IL25Q9H293 177 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 TDRD3Q9H7E2 651 aaKnown RBP12.14□□□□□ -0.47
SYNPO-202ENST00000394243 PCDH9Q9HC56 1237 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 HOXC10Q9NYD6 342 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 CRLS1Q9UJA2 301 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 NUDT5Q9UKK9 219 aa12.14□□□□□ -0.47
SYNPO-202ENST00000394243 AAR2Q9Y312 384 aaKnown RBP12.14□□□□□ -0.47
SYNPO-202ENST00000394243 A0A0G2JLW4 131 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 GCLCP48506 637 aaPredicted RBP12.13□□□□□ -0.47
SYNPO-202ENST00000394243 STARP49675 285 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 MGAT5Q09328 741 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 NDUFAF6Q330K2 333 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 DENND5AQ6IQ26 1287 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 FAM9CQ8IZT9 166 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 EMC1Q8N766 993 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms