RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 CCR1P32246 355 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 FLT3P36888 993 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 PRPSAP1Q14558 356 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 GEN1Q17RS7 908 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 FAM71AQ8IYT1 594 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 ATPAF2Q8N5M1 289 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 SLC4A11Q8NBS3 891 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 OR6K2Q8NGY2 324 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 IFT43Q96FT9 208 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 WNT8AQ9H1J5 351 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 GDF3Q9NR23 364 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 FARP1Q9Y4F1 1045 aaPredicted RBP10.67□□□□□ -0.7
COL6A3-205ENST00000392004 CCDC195A0A1B0GUA6 201 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 GRID2IPA4D2P6 1211 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 CSH1P0DML2 217 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 CSH2P0DML3 217 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 GHRHRQ02643 423 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 PIGHQ14442 188 aaPredicted RBP10.67□□□□□ -0.7
COL6A3-205ENST00000392004 CCDC14Q49A88 953 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 PABPC1LQ4VXU2 614 aaKnown RBP10.67□□□□□ -0.7
COL6A3-205ENST00000392004 FAM43BQ6ZT52 329 aaPredicted RBP10.67□□□□□ -0.7
COL6A3-205ENST00000392004 FAM136AQ96C01 138 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 CFAP97Q9P2B7 532 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 UVRAGQ9P2Y5 699 aa10.67□□□□□ -0.7
COL6A3-205ENST00000392004 PAPPA2Q9BXP8 1791 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 SRRM3A6NNA2 597 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-205ENST00000392004 O00370 1275 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 TMEM253P0C7T8 217 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 MYBL1P10243 752 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 MBTPS1Q14703 1052 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 PPP1R2P3Q6NXS1 205 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 CYB5D1Q6P9G0 228 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 LRIG3Q6UXM1 1119 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 RNF19BQ6ZMZ0 732 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 DNAJB7Q7Z6W7 309 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-205ENST00000392004 UNC93AQ86WB7 457 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 CIR1Q86X95 450 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-205ENST00000392004 ANKS4BQ8N8V4 417 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 ATP6V0D2Q8N8Y2 350 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 C3orf58Q8NDZ4 430 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 IPMKQ8NFU5 416 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 LNX1Q8TBB1 728 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-205ENST00000392004 MAIP1Q8WWC4 291 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 CASKIN2Q8WXE0 1202 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 MYOCQ99972 504 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 TLR10Q9BXR5 811 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 SDCBP2Q9H190 292 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 MAN1C1Q9NR34 630 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 BAIAP2L1Q9UHR4 511 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 MCM8Q9UJA3 840 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 TEX28O15482 410 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 MIPP30301 263 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 SLC6A3Q01959 620 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 ZNF677Q86XU0 584 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 MREGQ8N565 214 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 TOP6BLQ8N6T0 577 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 FAM71DQ8N9W8 422 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 ALKBH8Q96BT7 664 aaKnown RBP10.66□□□□□ -0.7
COL6A3-205ENST00000392004 SGSM3Q96HU1 749 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 HAUS2Q9NVX0 235 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 PLA2G4CQ9UP65 541 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 ZSCAN5CA6NGD5 496 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-205ENST00000392004 YJEFN3A6XGL0 299 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 E7ENQ6 273 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 ACSL3O95573 720 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 JCHAINP01591 159 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 PAEPP09466 180 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 CST5P28325 142 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-205ENST00000392004 SCNN1BP51168 640 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 DR1Q01658 176 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 POU5F1BQ06416 359 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 PLEKHG4Q58EX7 1191 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 UBXN11Q5T124 520 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 MAP3K21Q5TCX8 1036 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 C12orf56Q8IXR9 622 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 C3orf20Q8ND61 904 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 SPPL2BQ8TCT7 592 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 MGARPQ8TDB4 240 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 BAP1Q92560 729 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 CNPY3Q9BT09 278 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 BBS2Q9BXC9 721 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 DUSP16Q9BY84 665 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 POPDC2Q9HBU9 364 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 TMBIM4Q9HC24 238 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 RAB6BQ9NRW1 208 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 ANAPC5Q9UJX4 755 aa10.66□□□□□ -0.7
COL6A3-205ENST00000392004 MYH9P35579 1960 aaKnown RBP10.65□□□□□ -0.7
COL6A3-205ENST00000392004 OR6C75A6NL08 312 aa10.65□□□□□ -0.7
COL6A3-205ENST00000392004 NOL4O94818 638 aa10.65□□□□□ -0.7
COL6A3-205ENST00000392004 SLC12A2P55011 1212 aa10.65□□□□□ -0.7
COL6A3-205ENST00000392004 IRX4P78413 519 aa10.65□□□□□ -0.7
COL6A3-205ENST00000392004 TMPRSS15P98073 1019 aa10.65□□□□□ -0.7
COL6A3-205ENST00000392004 KRT71Q3SY84 523 aa10.65□□□□□ -0.7
COL6A3-205ENST00000392004 RTN4RL1Q86UN2 441 aaPredicted RBP10.65□□□□□ -0.7
COL6A3-205ENST00000392004 MYLK4Q86YV6 388 aaPredicted RBP10.65□□□□□ -0.7
COL6A3-205ENST00000392004 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.65□□□□□ -0.7
COL6A3-205ENST00000392004 MYH11P35749 1972 aa10.65□□□□□ -0.7
COL6A3-205ENST00000392004 NRXN2Q9P2S2 1712 aa10.65□□□□□ -0.7
COL6A3-205ENST00000392004 ERBB2P04626 1255 aa10.65□□□□□ -0.7
COL6A3-205ENST00000392004 RHOCP08134 193 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms