RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 GPNMBQ14956 572 aa26.1■■□□□ 1.77
SHOX2-201ENST00000389589 RIBC1Q8N443 379 aaPredicted RBP26.1■■□□□ 1.77
SHOX2-201ENST00000389589 KLC2Q9H0B6 622 aa26.1■■□□□ 1.77
SHOX2-201ENST00000389589 ZCWPW1Q9H0M4 648 aa26.1■■□□□ 1.77
SHOX2-201ENST00000389589 DDIT4Q9NX09 232 aa26.1■■□□□ 1.77
SHOX2-201ENST00000389589 DTLQ9NZJ0 730 aa26.1■■□□□ 1.77
SHOX2-201ENST00000389589 LGALS13Q9UHV8 139 aa26.1■■□□□ 1.77
SHOX2-201ENST00000389589 CDH16O75309 829 aa26.09■■□□□ 1.77
SHOX2-201ENST00000389589 TMEM63AO94886 807 aa26.09■■□□□ 1.77
SHOX2-201ENST00000389589 LSP1P33241 339 aa26.09■■□□□ 1.77
SHOX2-201ENST00000389589 MMP13P45452 471 aa26.09■■□□□ 1.77
SHOX2-201ENST00000389589 ZNF135P52742 658 aaPredicted RBP26.09■■□□□ 1.77
SHOX2-201ENST00000389589 ZSCAN26Q16670 478 aa26.09■■□□□ 1.77
SHOX2-201ENST00000389589 BSPRYQ5W0U4 402 aa26.09■■□□□ 1.77
SHOX2-201ENST00000389589 KCNT2Q6UVM3 1135 aa26.09■■□□□ 1.77
SHOX2-201ENST00000389589 PPCSQ9HAB8 311 aa26.09■■□□□ 1.77
SHOX2-201ENST00000389589 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP26.09■■□□□ 1.77
SHOX2-201ENST00000389589 DNAJB4Q9UDY4 337 aa26.09■■□□□ 1.77
SHOX2-201ENST00000389589 PRG3Q9Y2Y8 225 aaPredicted RBP26.09■■□□□ 1.77
SHOX2-201ENST00000389589 DYNC1LI1Q9Y6G9 523 aaKnown RBP26.09■■□□□ 1.77
SHOX2-201ENST00000389589 TANC1Q9C0D5 1861 aa26.09■■□□□ 1.77
SHOX2-201ENST00000389589 TTC3P53804 2025 aa26.09■■□□□ 1.77
SHOX2-201ENST00000389589 E7EVH7 732 aa26.08■■□□□ 1.77
SHOX2-201ENST00000389589 EEF2KO00418 725 aaKnown RBP26.08■■□□□ 1.77
SHOX2-201ENST00000389589 GCATO75600 419 aa26.08■■□□□ 1.77
SHOX2-201ENST00000389589 NRLP54845 237 aa26.08■■□□□ 1.77
SHOX2-201ENST00000389589 FASTKD3Q14CZ7 662 aaKnown RBP26.08■■□□□ 1.77
SHOX2-201ENST00000389589 OLFM3Q96PB7 478 aa26.08■■□□□ 1.77
SHOX2-201ENST00000389589 VWA8A3KMH1 1905 aa26.08■■□□□ 1.77
SHOX2-201ENST00000389589 TCRBV7S3A2A0A539 114 aa26.08■■□□□ 1.77
SHOX2-201ENST00000389589 DGKIO75912 1065 aa26.08■■□□□ 1.77
SHOX2-201ENST00000389589 MAP3K6O95382 1288 aa26.08■■□□□ 1.77
SHOX2-201ENST00000389589 TSHRP16473 764 aa26.08■■□□□ 1.77
SHOX2-201ENST00000389589 HCAR3P49019 387 aa26.08■■□□□ 1.77
SHOX2-201ENST00000389589 CBLBQ13191 982 aa26.08■■□□□ 1.77
SHOX2-201ENST00000389589 NFE2Q16621 373 aaPredicted RBP26.08■■□□□ 1.77
SHOX2-201ENST00000389589 FNBP1LQ5T0N5 605 aa26.08■■□□□ 1.77
SHOX2-201ENST00000389589 TAB3Q8N5C8 712 aaPredicted RBP26.08■■□□□ 1.77
SHOX2-201ENST00000389589 ADAM32Q8TC27 787 aa26.08■■□□□ 1.77
SHOX2-201ENST00000389589 PYROXD1Q8WU10 500 aa26.08■■□□□ 1.77
SHOX2-201ENST00000389589 COLEC11Q9BWP8 271 aa26.08■■□□□ 1.77
SHOX2-201ENST00000389589 RAB6BQ9NRW1 208 aa26.08■■□□□ 1.77
SHOX2-201ENST00000389589 ETNK2Q9NVF9 386 aa26.08■■□□□ 1.77
SHOX2-201ENST00000389589 LRFN2Q9ULH4 789 aa26.08■■□□□ 1.77
SHOX2-201ENST00000389589 MYO16Q9Y6X6 1858 aa26.07■■□□□ 1.76
SHOX2-201ENST00000389589 HOXA2O43364 376 aa26.07■■□□□ 1.76
SHOX2-201ENST00000389589 CREB3O43889 395 aa26.07■■□□□ 1.76
SHOX2-201ENST00000389589 ZNF189O75820 626 aaPredicted RBP26.07■■□□□ 1.76
SHOX2-201ENST00000389589 PHBP35232 272 aa26.07■■□□□ 1.76
SHOX2-201ENST00000389589 GRIK1P39086 918 aa26.07■■□□□ 1.76
SHOX2-201ENST00000389589 CXCR3P49682 368 aa26.07■■□□□ 1.76
SHOX2-201ENST00000389589 HTRA3P83110 453 aa26.07■■□□□ 1.76
SHOX2-201ENST00000389589 DPYSQ14117 519 aa26.07■■□□□ 1.76
SHOX2-201ENST00000389589 SLC39A12Q504Y0 691 aa26.07■■□□□ 1.76
SHOX2-201ENST00000389589 HEATR6Q6AI08 1181 aaKnown RBP26.07■■□□□ 1.76
SHOX2-201ENST00000389589 RFX8Q6ZV50 586 aa26.07■■□□□ 1.76
SHOX2-201ENST00000389589 TFB1MQ8WVM0 346 aaKnown RBP26.07■■□□□ 1.76
SHOX2-201ENST00000389589 EDEM1Q92611 657 aa26.07■■□□□ 1.76
SHOX2-201ENST00000389589 FUBP3Q96I24 572 aaKnown RBP eCLIP26.07■■□□□ 1.76
SHOX2-201ENST00000389589 DEFB118Q96PH6 123 aa26.07■■□□□ 1.76
SHOX2-201ENST00000389589 VPS37BQ9H9H4 285 aa26.07■■□□□ 1.76
SHOX2-201ENST00000389589 TMPRSS4Q9NRS4 437 aa26.07■■□□□ 1.76
SHOX2-201ENST00000389589 OGDHLQ9ULD0 1010 aa26.07■■□□□ 1.76
SHOX2-201ENST00000389589 ZMYND8Q9ULU4 1186 aaPredicted RBP26.07■■□□□ 1.76
SHOX2-201ENST00000389589 C5orf60A6NFR6 353 aa26.07■■□□□ 1.76
SHOX2-201ENST00000389589 MAGEA6P43360 314 aa26.07■■□□□ 1.76
SHOX2-201ENST00000389589 PAFAH1B3Q15102 231 aaKnown RBP26.07■■□□□ 1.76
SHOX2-201ENST00000389589 CTU1Q7Z7A3 348 aaKnown RBP26.07■■□□□ 1.76
SHOX2-201ENST00000389589 ATP11CQ8NB49 1132 aa26.07■■□□□ 1.76
SHOX2-201ENST00000389589 TET1Q8NFU7 2136 aa26.07■■□□□ 1.76
SHOX2-201ENST00000389589 FERMT1Q9BQL6 677 aa26.07■■□□□ 1.76
SHOX2-201ENST00000389589 EXOC1LA0A1B0GW35 172 aa26.06■■□□□ 1.76
SHOX2-201ENST00000389589 GAD2Q05329 585 aa26.06■■□□□ 1.76
SHOX2-201ENST00000389589 SEMA3BQ13214 749 aa26.06■■□□□ 1.76
SHOX2-201ENST00000389589 PDZD4Q76G19 769 aaPredicted RBP26.06■■□□□ 1.76
SHOX2-201ENST00000389589 CCDC13Q8IYE1 715 aa26.06■■□□□ 1.76
SHOX2-201ENST00000389589 CENPTQ96BT3 561 aa26.06■■□□□ 1.76
SHOX2-201ENST00000389589 CASD1Q96PB1 797 aa26.06■■□□□ 1.76
SHOX2-201ENST00000389589 WDCPQ9H6R7 721 aa26.06■■□□□ 1.76
SHOX2-201ENST00000389589 ADAM28Q9UKQ2 775 aa26.06■■□□□ 1.76
SHOX2-201ENST00000389589 RAD54BQ9Y620 910 aa26.06■■□□□ 1.76
SHOX2-201ENST00000389589 TNFRSF10BO14763 440 aa26.05■■□□□ 1.76
SHOX2-201ENST00000389589 SLC5A3P53794 718 aa26.05■■□□□ 1.76
SHOX2-201ENST00000389589 PDK1Q15118 436 aa26.05■■□□□ 1.76
SHOX2-201ENST00000389589 HP1BP3Q5SSJ5 553 aaPredicted RBP26.05■■□□□ 1.76
SHOX2-201ENST00000389589 TDRPQ86YL5 185 aa26.05■■□□□ 1.76
SHOX2-201ENST00000389589 ARHGEF2Q92974 986 aaKnown RBP26.05■■□□□ 1.76
SHOX2-201ENST00000389589 EPN3Q9H201 632 aa26.05■■□□□ 1.76
SHOX2-201ENST00000389589 ABCC13Q9NSE7 274 aa26.05■■□□□ 1.76
SHOX2-201ENST00000389589 SCN5AQ14524 2016 aa26.05■■□□□ 1.76
SHOX2-201ENST00000389589 MFSD11O43934 449 aa26.05■■□□□ 1.76
SHOX2-201ENST00000389589 MSS51Q4VC12 460 aa26.05■■□□□ 1.76
SHOX2-201ENST00000389589 VARS2Q5ST30 1063 aaKnown RBP26.05■■□□□ 1.76
SHOX2-201ENST00000389589 EXOC3L1Q86VI1 746 aa26.05■■□□□ 1.76
SHOX2-201ENST00000389589 ANKMY2Q8IV38 441 aa26.05■■□□□ 1.76
SHOX2-201ENST00000389589 ZNF784Q8NCA9 323 aaPredicted RBP26.05■■□□□ 1.76
SHOX2-201ENST00000389589 SCAMP5Q8TAC9 235 aa26.05■■□□□ 1.76
SHOX2-201ENST00000389589 PQBP1O60828 265 aaKnown RBP26.04■■□□□ 1.76
SHOX2-201ENST00000389589 PARNO95453 639 aaKnown RBP26.04■■□□□ 1.76
SHOX2-201ENST00000389589 YWHAGP61981 247 aaKnown RBP eCLIP26.04■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms