RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 NDUFAF1Q9Y375 327 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 FAM25EA8MYX2 175 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 UMPSP11172 480 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 CYP2A7P20853 494 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 MYL9P24844 172 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 COPZ1P61923 177 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 HLA-DQA1Q5Y7H0 255 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 RIPOR1Q6ZS17 1223 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 APOBEC3FQ8IUX4 373 aaKnown RBP11.92□□□□□ -0.5
VPS13A-205ENST00000376636 ASB2Q96Q27 587 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 SEPHS2Q99611 448 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 REEP1Q9H902 201 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 C12orf4Q9NQ89 552 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 R3HDM2Q9Y2K5 976 aaKnown RBP11.92□□□□□ -0.5
VPS13A-205ENST00000376636 USP17L15C9J2P7 530 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 USP17L13C9JLJ4 530 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 USP17L11C9JVI0 530 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 USP17L18D6R9N7 530 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 USP17L22D6RA61 530 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 USP17L17D6RBQ6 530 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 USP17L19D6RCP7 530 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 USP17L20D6RJB6 530 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 RBMXL2O75526 392 aaKnown RBP11.92□□□□□ -0.5
VPS13A-205ENST00000376636 GH2P01242 217 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 CHRNGP07510 517 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 CYP2C8P10632 490 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 MTTPP55157 894 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 USP17L24Q0WX57 530 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 KCNMA1Q12791 1236 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 USP17L6PQ6QN14 398 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 MTSS1LQ765P7 747 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 CST8O60676 142 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 CDH3P22223 829 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 ALDH3A2P51648 485 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 DCP1BQ8IZD4 617 aaKnown RBP11.92□□□□□ -0.5
VPS13A-205ENST00000376636 RP9Q8TA86 221 aaKnown RBP11.92□□□□□ -0.5
VPS13A-205ENST00000376636 USP27XA6NNY8 438 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 IRF1P10914 325 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 SLC26A3P40879 764 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 CLEC4GQ6UXB4 293 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 PACS1Q6VY07 963 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 ELOA2Q8IYF1 753 aaPredicted RBP11.92□□□□□ -0.5
VPS13A-205ENST00000376636 EFHD2Q96C19 240 aaPredicted RBP11.92□□□□□ -0.5
VPS13A-205ENST00000376636 COA1Q9GZY4 146 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 PARNO95453 639 aaKnown RBP11.92□□□□□ -0.5
VPS13A-205ENST00000376636 TEKT5Q96M29 485 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 CCDC28BQ9BUN5 200 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 EMC3Q9P0I2 261 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 CKLFQ9UBR5 152 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 SNAP91O60641 907 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 GPR15P49685 360 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 C10orf120Q5SQS8 335 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 DAW1Q8N136 415 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 DYNLL2Q96FJ2 89 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 WDCPQ9H6R7 721 aa11.92□□□□□ -0.5
VPS13A-205ENST00000376636 VPS72Q15906 364 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 BOLA3Q53S33 107 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 TDRD10Q5VZ19 366 aaKnown RBP11.91□□□□□ -0.5
VPS13A-205ENST00000376636 ERGIC3Q9Y282 383 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 COILP38432 576 aaPredicted RBP11.91□□□□□ -0.5
VPS13A-205ENST00000376636 CDC42P60953 191 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 ATG14Q6ZNE5 492 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 LRRC40Q9H9A6 602 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 EPN2O95208 641 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 STK4Q13043 487 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 BROXQ5VW32 411 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 PEX5LQ8IYB4 626 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 BSDC1Q9NW68 430 aaPredicted RBP11.91□□□□□ -0.5
VPS13A-205ENST00000376636 CIDEBQ9UHD4 219 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 AGAP1Q9UPQ3 857 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 CHURC1-FNTBB4DL54 471 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 FARP2O94887 1054 aaPredicted RBP11.91□□□□□ -0.5
VPS13A-205ENST00000376636 SRGNP10124 158 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 PHKG2P15735 406 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 TNFAIP8L3Q5GJ75 292 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 STRA8Q7Z7C7 330 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 TRPV1Q8NER1 839 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 ITFG1Q8TB96 612 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 KCNB2Q92953 911 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 RNF145Q96MT1 663 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 SEC24AO95486 1093 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 LDOC1O95751 146 aaPredicted RBP11.91□□□□□ -0.5
VPS13A-205ENST00000376636 GLP2RO95838 553 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 ODC1P11926 461 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 AGKQ53H12 422 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 FNDC5Q8NAU1 212 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 CCDC115Q96NT0 180 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 FAM49BQ9NUQ9 324 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 PMPCBO75439 489 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 DALRD3Q5D0E6 543 aaKnown RBP11.91□□□□□ -0.5
VPS13A-205ENST00000376636 PRR5LQ6MZQ0 368 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 MEIOBQ8N635 442 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 ZNF232Q9UNY5 417 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 ARHGEF40Q8TER5 1519 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 CYP7B1O75881 506 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 RECQL5O94762 991 aaPredicted RBP11.91□□□□□ -0.5
VPS13A-205ENST00000376636 SEC24CP53992 1094 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 SCRN3Q0VDG4 424 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 GRM4Q14833 912 aa11.91□□□□□ -0.5
VPS13A-205ENST00000376636 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms