RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 IGHV4-34P06331 123 aa8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 KRT19P08727 400 aa8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 WARSP23381 471 aaKnown RBP8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 YWHAQP27348 245 aa8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 OXTRP30559 389 aa8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 HNF1BP35680 557 aa8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 PRPHP41219 470 aa8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 GRIA4P48058 902 aa8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 DGKGP49619 791 aa8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 MMP16P51512 607 aa8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 INSM1Q01101 510 aaPredicted RBP8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 POU5F1Q01860 360 aaKnown RBP8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 RHDQ02161 417 aa8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 HECTD3Q5T447 861 aa8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 KIAA1614Q5VZ46 1190 aa8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 PAQR9Q6ZVX9 377 aa8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 NT5DC4Q86YG4 428 aa8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 EID2Q8N6I1 236 aa8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 FBXO18Q8NFZ0 1043 aa8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 SAP25Q8TEE9 199 aa8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 POMGNT1Q8WZA1 660 aa8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 FBXO32Q969P5 355 aa8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 C8orf76Q96K31 380 aa8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 SLITRK1Q96PX8 696 aa8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 STRA6Q9BX79 667 aa8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 FGFBP2Q9BYJ0 223 aa8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 CAAP1Q9H8G2 361 aa8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 PARVGQ9HBI0 331 aa8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 OSGEPQ9NPF4 335 aa8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 IL17BQ9UHF5 180 aa8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 ITGA11Q9UKX5 1188 aa8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 PCDHB1Q9Y5F3 818 aa8.98□□□□□ -0.97
HMGB1P39-201ENST00000366304 MYLKQ15746 1914 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 MYH11P35749 1972 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 DOPEY2Q9Y3R5 2298 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 NBPF19A0A087WUL8 3843 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 TERTO14746 1132 aaKnown RBP8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 MDM4O15151 490 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 EPB41L2O43491 1005 aaKnown RBP8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 DXOO77932 396 aaKnown RBP8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 FAM13AO94988 1023 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 LDOC1O95751 146 aaPredicted RBP8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 KLKB1P03952 638 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 PTPN1P18031 435 aaKnown RBP8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 ACTN2P35609 894 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 MFAP3P55082 362 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 RBP5P82980 135 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 NFKB2Q00653 900 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 MCM6Q14566 821 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 ZNF234Q14588 700 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 LAPTM4AQ15012 233 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 SLFN12LQ6IEE8 588 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 DTHD1Q6ZMT9 781 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 HS2ST1Q7LGA3 356 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 KANSL1Q7Z3B3 1105 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 PRICKLE2Q7Z3G6 844 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 RETREG3Q86VR2 466 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 NUP93Q8N1F7 819 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 DCBLD1Q8N8Z6 715 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 EXD3Q8N9H8 876 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 SNRNP27Q8WVK2 155 aaKnown RBP8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 PRCCQ92733 491 aaPredicted RBP8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 MED8Q96G25 268 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 HPDLQ96IR7 371 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 PIWIL1Q96J94 861 aaKnown RBP8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 SLC6A18Q96N87 628 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 XPO6Q96QU8 1125 aaKnown RBP8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 LGMNQ99538 433 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 RAB34Q9BZG1 259 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 ZHX3Q9H4I2 956 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 GTF3C3Q9Y5Q9 886 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 SPTAN1Q13813 2472 aaKnown RBP8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 RELNP78509 3460 aa8.97□□□□□ -0.97
HMGB1P39-201ENST00000366304 A0A1W2PNU3 283 aaPredicted RBP8.96□□□□□ -0.98
HMGB1P39-201ENST00000366304 FAM92AA1XBS5 289 aa8.96□□□□□ -0.98
HMGB1P39-201ENST00000366304 C10orf142B7Z368 130 aa8.96□□□□□ -0.98
HMGB1P39-201ENST00000366304 BEST1O76090 585 aa8.96□□□□□ -0.98
HMGB1P39-201ENST00000366304 FSBPO95073 299 aa8.96□□□□□ -0.98
HMGB1P39-201ENST00000366304 PENKP01210 267 aaPredicted RBP8.96□□□□□ -0.98
HMGB1P39-201ENST00000366304 MPOP05164 745 aa8.96□□□□□ -0.98
HMGB1P39-201ENST00000366304 C1SP09871 688 aa8.96□□□□□ -0.98
HMGB1P39-201ENST00000366304 GLDCP23378 1020 aa8.96□□□□□ -0.98
HMGB1P39-201ENST00000366304 CD27P26842 260 aa8.96□□□□□ -0.98
HMGB1P39-201ENST00000366304 DDIT3P35638 169 aa8.96□□□□□ -0.98
HMGB1P39-201ENST00000366304 CASP5P51878 434 aa8.96□□□□□ -0.98
HMGB1P39-201ENST00000366304 SLC5A3P53794 718 aa8.96□□□□□ -0.98
HMGB1P39-201ENST00000366304 TMPRSS3P57727 454 aa8.96□□□□□ -0.98
HMGB1P39-201ENST00000366304 BNIP3Q12983 259 aa8.96□□□□□ -0.98
HMGB1P39-201ENST00000366304 STARD3Q14849 445 aa8.96□□□□□ -0.98
HMGB1P39-201ENST00000366304 TEAD4Q15561 434 aa8.96□□□□□ -0.98
HMGB1P39-201ENST00000366304 FYB2Q5VWT5 728 aa8.96□□□□□ -0.98
HMGB1P39-201ENST00000366304 DPH6Q7L8W6 267 aa8.96□□□□□ -0.98
HMGB1P39-201ENST00000366304 ZNF720Q7Z2F6 126 aa8.96□□□□□ -0.98
HMGB1P39-201ENST00000366304 SFR1Q86XK3 245 aa8.96□□□□□ -0.98
HMGB1P39-201ENST00000366304 ZNF366Q8N895 744 aa8.96□□□□□ -0.98
HMGB1P39-201ENST00000366304 ZMIZ2Q8NF64 920 aa8.96□□□□□ -0.98
HMGB1P39-201ENST00000366304 RFFLQ8WZ73 363 aa8.96□□□□□ -0.98
HMGB1P39-201ENST00000366304 OVCA2Q8WZ82 227 aa8.96□□□□□ -0.98
HMGB1P39-201ENST00000366304 CBWD1Q9BRT8 395 aa8.96□□□□□ -0.98
HMGB1P39-201ENST00000366304 PCED1AQ9H1Q7 454 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms