RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 NR1H2P55055 460 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 LRRC55Q6ZSA7 311 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 TTC30BQ8N4P2 665 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 VCPIP1Q96JH7 1222 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 NMRK1Q9NWW6 199 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 UBAP1Q9NZ09 502 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 TRMT6Q9UJA5 497 aaKnown RBP20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 EFCAB14O75071 495 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 MED26O95402 600 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 IMPDH2P12268 514 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 HNRNPH3P31942 346 aaKnown RBP20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 ZNF618Q5T7W0 954 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 EFCAB12Q6NXP0 572 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 BHLHE22Q8NFJ8 381 aaPredicted RBP20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 GANCQ8TET4 914 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 KAT2BQ92831 832 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 HMG20AQ9NP66 347 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 PIM2Q9P1W9 311 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 VTI1BQ9UEU0 232 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 SORCS3Q9UPU3 1222 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 COL5A2P05997 1499 aaPredicted RBP20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 FGFR2P21802 821 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 FGFR3P22607 806 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 POU1F1P28069 291 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 PPP3CCP48454 512 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 MARCKSL1P49006 195 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 TP53BP2Q13625 1128 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 PARP6Q2NL67 630 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 ARHGAP17Q68EM7 881 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 KYAT3Q6YP21 454 aaKnown RBP20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 WDCPQ9H6R7 721 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 VANGL2Q9ULK5 521 aa20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.04■□□□□ 0.8
CCDC88B-202ENST00000356786 MAGEB2O15479 319 aa20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 CSDE1O75534 798 aaKnown RBP20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 PRIM2P49643 509 aa20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 TAF5Q15542 800 aa20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 SAMD4BQ5PRF9 694 aaKnown RBP20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 TTC27Q6P3X3 843 aa20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 RBM44Q6ZP01 1051 aaKnown RBP20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 SLFN11Q7Z7L1 901 aa20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 FBXW8Q8N3Y1 598 aa20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 DLG3Q92796 817 aa20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 SEMA4DQ92854 862 aa20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 RNF145Q96MT1 663 aa20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 FAM210AQ96ND0 272 aa20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 REXO4Q9GZR2 422 aaKnown RBP20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 UBP1Q9NZI7 540 aa20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 KIAA1257Q9ULG3 409 aa20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 VWA5AO00534 786 aa20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 AMHR2Q16671 573 aa20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 FAM98BQ52LJ0 330 aaKnown RBP20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 ZBED2Q9BTP6 218 aa20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 C9orf16Q9BUW7 83 aa20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 CEP41Q9BYV8 373 aa20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 WWOXQ9NZC7 414 aa20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 WDR27A2RRH5 827 aa20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 SHOX2O60902 331 aaPredicted RBP20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 GJB6O95452 261 aa20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 CCDC130P13994 396 aa20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 FLT3P36888 993 aa20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 COL9A3Q14050 684 aaPredicted RBP20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 TTC7BQ86TV6 843 aa20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 FAM13CQ8NE31 585 aa20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 VPS33AQ96AX1 596 aa20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 GGA3Q9NZ52 723 aa20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 TUBGCP4Q9UGJ1 667 aa20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 RABGEF1Q9UJ41 708 aa20.03■□□□□ 0.8
CCDC88B-202ENST00000356786 PDZK1P1A8MUH7 402 aa20.02■□□□□ 0.8
CCDC88B-202ENST00000356786 PBX1P40424 430 aa20.02■□□□□ 0.8
CCDC88B-202ENST00000356786 CASP7P55210 303 aa20.02■□□□□ 0.8
CCDC88B-202ENST00000356786 GCNT1Q02742 428 aa20.02■□□□□ 0.8
CCDC88B-202ENST00000356786 PTPN11Q06124 597 aaPredicted RBP20.02■□□□□ 0.8
CCDC88B-202ENST00000356786 TMEM62Q0P6H9 643 aa20.02■□□□□ 0.8
CCDC88B-202ENST00000356786 BST1Q10588 318 aa20.02■□□□□ 0.8
CCDC88B-202ENST00000356786 PCDH20Q8N6Y1 951 aaKnown RBP20.02■□□□□ 0.8
CCDC88B-202ENST00000356786 ITGB1BP2Q9UKP3 347 aa20.02■□□□□ 0.8
CCDC88B-202ENST00000356786 CYP2F1P24903 491 aa20.02■□□□□ 0.8
CCDC88B-202ENST00000356786 KAT5Q92993 513 aa20.02■□□□□ 0.8
CCDC88B-202ENST00000356786 WDR41Q9HAD4 459 aa20.02■□□□□ 0.8
CCDC88B-202ENST00000356786 A1CFQ9NQ94 594 aaKnown RBP20.02■□□□□ 0.8
CCDC88B-202ENST00000356786 NDUFAF1Q9Y375 327 aa20.02■□□□□ 0.8
CCDC88B-202ENST00000356786 CHKAP35790 457 aa20.02■□□□□ 0.8
CCDC88B-202ENST00000356786 CCT8P50990 548 aa20.02■□□□□ 0.8
CCDC88B-202ENST00000356786 XRRA1Q6P2D8 792 aa20.02■□□□□ 0.8
CCDC88B-202ENST00000356786 ART4Q93070 314 aa20.02■□□□□ 0.8
CCDC88B-202ENST00000356786 PWWP2AQ96N64 755 aa20.02■□□□□ 0.8
CCDC88B-202ENST00000356786 GPR63Q9BZJ6 419 aa20.02■□□□□ 0.8
CCDC88B-202ENST00000356786 FBXO6Q9NRD1 293 aaPredicted RBP20.02■□□□□ 0.8
CCDC88B-202ENST00000356786 UBR1Q8IWV7 1749 aa20.02■□□□□ 0.79
CCDC88B-202ENST00000356786 STX7O15400 261 aaKnown RBP20.02■□□□□ 0.79
CCDC88B-202ENST00000356786 PIAS1O75925 651 aa20.02■□□□□ 0.79
CCDC88B-202ENST00000356786 MPOP05164 745 aa20.02■□□□□ 0.79
CCDC88B-202ENST00000356786 FAM86B2P0C5J1 330 aa20.02■□□□□ 0.79
CCDC88B-202ENST00000356786 TTKP33981 857 aa20.02■□□□□ 0.79
CCDC88B-202ENST00000356786 SLC5A9Q2M3M2 681 aa20.02■□□□□ 0.79
CCDC88B-202ENST00000356786 PPP1R10Q96QC0 940 aaKnown RBP20.02■□□□□ 0.79
CCDC88B-202ENST00000356786 CACNA2D2Q9NY47 1150 aa20.02■□□□□ 0.79
CCDC88B-202ENST00000356786 SPASTQ9UBP0 616 aa20.02■□□□□ 0.79
CCDC88B-202ENST00000356786 A8MUI8 341 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms