RNA–Protein interactions for RNA: ENST00000351808.9

IFT88-202, Transcript of intraflagellar transport 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene IFT88, Length 2,856 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT88-202ENST00000351808 NFIL3Q16649 462 aa13.65□□□□□ -0.22
IFT88-202ENST00000351808 TTC39BQ5VTQ0 682 aaPredicted RBP13.65□□□□□ -0.22
IFT88-202ENST00000351808 RINT1Q6NUQ1 792 aa13.65□□□□□ -0.22
IFT88-202ENST00000351808 C16orf46Q6P387 395 aa13.65□□□□□ -0.22
IFT88-202ENST00000351808 BTLAQ7Z6A9 289 aa13.65□□□□□ -0.22
IFT88-202ENST00000351808 TTC30AQ86WT1 665 aa13.65□□□□□ -0.22
IFT88-202ENST00000351808 MMAAQ8IVH4 418 aaKnown RBP13.65□□□□□ -0.22
IFT88-202ENST00000351808 PDIK1LQ8N165 341 aa13.65□□□□□ -0.22
IFT88-202ENST00000351808 ZNF786Q8N393 782 aa13.65□□□□□ -0.22
IFT88-202ENST00000351808 NAT8LQ8N9F0 302 aa13.65□□□□□ -0.22
IFT88-202ENST00000351808 ACDQ96AP0 544 aa13.65□□□□□ -0.22
IFT88-202ENST00000351808 SLC29A1Q99808 456 aa13.65□□□□□ -0.22
IFT88-202ENST00000351808 SAE1Q9UBE0 346 aaPredicted RBP13.65□□□□□ -0.22
IFT88-202ENST00000351808 ERVV-2B6SEH9 535 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 TISP43B9A030 160 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 USP17L15C9J2P7 530 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 USP17L13C9JLJ4 530 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 KBTBD13C9JR72 458 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 USP17L11C9JVI0 530 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 USP17L18D6R9N7 530 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 USP17L22D6RA61 530 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 USP17L17D6RBQ6 530 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 USP17L19D6RCP7 530 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 USP17L20D6RJB6 530 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 DYNC1LI2O43237 492 aaPredicted RBP13.64□□□□□ -0.23
IFT88-202ENST00000351808 CLASP2O75122 1294 aaKnown RBP13.64□□□□□ -0.23
IFT88-202ENST00000351808 CLK2P49760 499 aaKnown RBP13.64□□□□□ -0.23
IFT88-202ENST00000351808 NKX2-5P52952 324 aaPredicted RBP13.64□□□□□ -0.23
IFT88-202ENST00000351808 GDF10P55107 478 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 SPIRE1Q08AE8 756 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 USP17L24Q0WX57 530 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 CAVIN4Q5BKX8 364 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 ZNF618Q5T7W0 954 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 USP17L6PQ6QN14 398 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 PTAR1Q7Z6K3 402 aaPredicted RBP13.64□□□□□ -0.23
IFT88-202ENST00000351808 ZNF34Q8IZ26 560 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 ZSCAN18Q8TBC5 510 aaPredicted RBP13.64□□□□□ -0.23
IFT88-202ENST00000351808 DDX1Q92499 740 aaKnown RBP13.64□□□□□ -0.23
IFT88-202ENST00000351808 SHC3Q92529 594 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 NACC2Q96BF6 587 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 FAM84BQ96KN1 310 aaPredicted RBP13.64□□□□□ -0.23
IFT88-202ENST00000351808 ALPK1Q96QP1 1244 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 SERPINI1Q99574 410 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 NPLQ9BXD5 320 aaPredicted RBP13.64□□□□□ -0.23
IFT88-202ENST00000351808 TDRD1Q9BXT4 1180 aaKnown RBP13.64□□□□□ -0.23
IFT88-202ENST00000351808 DDX56Q9NY93 547 aaKnown RBP13.64□□□□□ -0.23
IFT88-202ENST00000351808 DRG1Q9Y295 367 aaKnown RBP13.64□□□□□ -0.23
IFT88-202ENST00000351808 ATP11BQ9Y2G3 1177 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 AP4S1Q9Y587 144 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 E7ESA3 106 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 ZBTB14O43829 449 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 RSL1D1O76021 490 aaKnown RBP13.64□□□□□ -0.23
IFT88-202ENST00000351808 AKR1B1P15121 316 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 ADRA2BP18089 450 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 VAMP7P51809 220 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 LDLRAP1Q5SW96 308 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 SCARA3Q6AZY7 606 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 RNF19BQ6ZMZ0 732 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 OR7G1Q8NGA0 311 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 LILRB4Q8NHJ6 448 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 CALML6Q8TD86 181 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 ACSF2Q96CM8 615 aaPredicted RBP13.64□□□□□ -0.23
IFT88-202ENST00000351808 RTKNQ9BST9 563 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 MROQ9BYG7 248 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 PARVGQ9HBI0 331 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 RABL2AQ9UBK7 228 aaPredicted RBP13.64□□□□□ -0.23
IFT88-202ENST00000351808 B3GNT3Q9Y2A9 372 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 LRP5O75197 1615 aa13.64□□□□□ -0.23
IFT88-202ENST00000351808 PPP1R11O60927 126 aaPredicted RBP13.63□□□□□ -0.23
IFT88-202ENST00000351808 SNRPAP09012 282 aaKnown RBP13.63□□□□□ -0.23
IFT88-202ENST00000351808 GAP43P17677 238 aa13.63□□□□□ -0.23
IFT88-202ENST00000351808 HSPA1LP34931 641 aa13.63□□□□□ -0.23
IFT88-202ENST00000351808 GALNT2Q10471 571 aa13.63□□□□□ -0.23
IFT88-202ENST00000351808 PGS1Q32NB8 556 aa13.63□□□□□ -0.23
IFT88-202ENST00000351808 TEDDM1Q5T9Z0 273 aa13.63□□□□□ -0.23
IFT88-202ENST00000351808 DRICH1Q6PGQ1 229 aaPredicted RBP13.63□□□□□ -0.23
IFT88-202ENST00000351808 ATG14Q6ZNE5 492 aa13.63□□□□□ -0.23
IFT88-202ENST00000351808 RFPL4BQ6ZWI9 263 aa13.63□□□□□ -0.23
IFT88-202ENST00000351808 NDUFAF2Q8N183 169 aa13.63□□□□□ -0.23
IFT88-202ENST00000351808 PDCD6IPQ8WUM4 868 aaKnown RBP13.63□□□□□ -0.23
IFT88-202ENST00000351808 FAR2Q96K12 515 aa13.63□□□□□ -0.23
IFT88-202ENST00000351808 LENG8Q96PV6 779 aaPredicted RBP13.63□□□□□ -0.23
IFT88-202ENST00000351808 EYA3Q99504 573 aa13.63□□□□□ -0.23
IFT88-202ENST00000351808 PSD2Q9BQI7 771 aa13.63□□□□□ -0.23
IFT88-202ENST00000351808 XPO7Q9UIA9 1087 aaKnown RBP13.63□□□□□ -0.23
IFT88-202ENST00000351808 CNOT11Q9UKZ1 510 aaKnown RBP13.63□□□□□ -0.23
IFT88-202ENST00000351808 CXorf49A8MYA2 514 aaPredicted RBP13.63□□□□□ -0.23
IFT88-202ENST00000351808 hCG_1984214I3L0E3 225 aa13.63□□□□□ -0.23
IFT88-202ENST00000351808 ZBTB39O15060 712 aa13.63□□□□□ -0.23
IFT88-202ENST00000351808 RFPL1O75677 317 aa13.63□□□□□ -0.23
IFT88-202ENST00000351808 SEC24DO94855 1032 aaPredicted RBP13.63□□□□□ -0.23
IFT88-202ENST00000351808 TCN1P20061 433 aaPredicted RBP13.63□□□□□ -0.23
IFT88-202ENST00000351808 DCKP27707 260 aa13.63□□□□□ -0.23
IFT88-202ENST00000351808 SLC1A6P48664 564 aa13.63□□□□□ -0.23
IFT88-202ENST00000351808 MLLT10P55197 1068 aa13.63□□□□□ -0.23
IFT88-202ENST00000351808 KLF10Q13118 480 aa13.63□□□□□ -0.23
IFT88-202ENST00000351808 RAB39AQ14964 217 aa13.63□□□□□ -0.23
IFT88-202ENST00000351808 FASTKD1Q53R41 847 aaKnown RBP13.63□□□□□ -0.23
IFT88-202ENST00000351808 PRR16Q569H4 304 aa13.63□□□□□ -0.23
IFT88-202ENST00000351808 PPM1LQ5SGD2 360 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms