RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 DCLK3Q9C098 648 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 TRNAU1APQ9NX07 287 aaKnown RBP6.33□□□□□ -1.4
CSMD1-201ENST00000335551 ARHGAP28Q9P2N2 729 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 POLR1DQ9Y2S0 133 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 STX16-NPEPL1H3BU86 382 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 STX16O14662 325 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 IL18RAPO95256 599 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 STIP1P31948 543 aaKnown RBP6.33□□□□□ -1.4
CSMD1-201ENST00000335551 ATP2C1P98194 919 aaPredicted RBP6.33□□□□□ -1.4
CSMD1-201ENST00000335551 TFDP3Q5H9I0 405 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 OTUD3Q5T2D3 398 aaPredicted RBP6.33□□□□□ -1.4
CSMD1-201ENST00000335551 TTC30AQ86WT1 665 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 TMIEQ8NEW7 156 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 IPMKQ8NFU5 416 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 ACTRT1Q8TDG2 376 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 AIFM2Q9BRQ8 373 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 SIK2Q9H0K1 926 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 TRMT13Q9NUP7 481 aaKnown RBP6.33□□□□□ -1.4
CSMD1-201ENST00000335551 WDR37Q9Y2I8 494 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 PCM1Q15154 2024 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 APOL3O95236 402 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 HOXA13P31271 388 aaPredicted RBP6.33□□□□□ -1.4
CSMD1-201ENST00000335551 GPC1P35052 558 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 GALNT3Q14435 633 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 DHDDSQ86SQ9 333 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 DCPSQ96C86 337 aaKnown RBP6.33□□□□□ -1.4
CSMD1-201ENST00000335551 CLN6Q9NWW5 311 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 ZNF112Q9UJU3 913 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 SYNPO2Q9UMS6 1093 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 RPS6KL1Q9Y6S9 549 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 ZC3H4Q9UPT8 1303 aaKnown RBP6.33□□□□□ -1.4
CSMD1-201ENST00000335551 OR6B1O95007 311 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 DHFRP00374 187 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 MSR1P21757 451 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 NAB1Q13506 487 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 RFX4Q33E94 735 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 SPDYCQ5MJ68 293 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 SLC9A4Q6AI14 798 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 TRIM74Q86UV6 250 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 TRIM73Q86UV7 250 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 TTC29Q8NA56 475 aaPredicted RBP6.33□□□□□ -1.4
CSMD1-201ENST00000335551 LXNQ9BS40 222 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 CLK4Q9HAZ1 481 aaKnown RBP6.33□□□□□ -1.4
CSMD1-201ENST00000335551 AGO2Q9UKV8 859 aaKnown RBP6.33□□□□□ -1.4
CSMD1-201ENST00000335551 SAMD9Q5K651 1589 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 ADGRL2O95490 1459 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 FASTKQ14296 549 aaKnown RBP6.33□□□□□ -1.4
CSMD1-201ENST00000335551 C1orf131Q8NDD1 294 aaKnown RBP6.33□□□□□ -1.4
CSMD1-201ENST00000335551 BLOC1S5Q8TDH9 187 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 APOPT1Q96IL0 206 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 SLC25A23Q9BV35 468 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 C1QTNF1Q9BXJ1 281 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 PUS7LQ9H0K6 701 aaKnown RBP6.33□□□□□ -1.4
CSMD1-201ENST00000335551 STAU2Q9NUL3 570 aaKnown RBP eCLIP6.33□□□□□ -1.4
CSMD1-201ENST00000335551 KCNK4Q9NYG8 393 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 DNAJC16Q9Y2G8 782 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 EFCAB6Q5THR3 1501 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 C2orf81A6NN90 581 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 PGK1P00558 417 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 CHRNGP07510 517 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 SDC2P34741 201 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 SLC1A6P48664 564 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 CBFBQ13951 182 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 ERAP2Q6P179 960 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 THNSL1Q8IYQ7 743 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 COA7Q96BR5 231 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 PNPLA8Q9NP80 782 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 SNX7Q9UNH6 387 aa6.33□□□□□ -1.4
CSMD1-201ENST00000335551 AAR2Q9Y312 384 aaKnown RBP6.33□□□□□ -1.4
CSMD1-201ENST00000335551 E2F8A0AVK6 867 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 CYP26A1O43174 497 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 PRLRP16471 622 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 GRK3P35626 688 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 UBXN2AP68543 259 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 ELF3P78545 371 aaPredicted RBP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 RABL6Q3YEC7 729 aaPredicted RBP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 ZNF772Q68DY9 489 aaPredicted RBP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 BHLHE22Q8NFJ8 381 aaPredicted RBP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 ACTRT2Q8TDY3 377 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 REPS1Q96D71 796 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 ALDH8A1Q9H2A2 487 aaPredicted RBP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 FBXO40Q9UH90 709 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 RPS6KA6Q9UK32 745 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 SHOC2Q9UQ13 582 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 SRRM3A6NNA2 597 aaPredicted RBP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 FAM25EA8MYX2 175 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 CCNKO75909 580 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 SERPINE1P05121 402 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 TPBGLP0DKB5 382 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 UCHL3P15374 230 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 GCLCP48506 637 aaPredicted RBP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 GSSP48637 474 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 GRIK3Q13003 919 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 CDC16Q13042 620 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 TPCN2Q8NHX9 752 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 C12orf66Q96MD2 445 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 MKLN1Q9UL63 735 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 ADGRL3Q9HAR2 1447 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 PLK4O00444 970 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 SLC16A4O15374 487 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms