RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 DNAJC17Q9NVM6 304 aaKnown RBP7.08□□□□□ -1.28
SF3B1-201ENST00000335508 PCYOX1Q9UHG3 505 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 GPR179Q6PRD1 2367 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 C2orf81A6NN90 581 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 DFFAO00273 331 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 ATP9BO43861 1147 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 MICAL2O94851 1124 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 POLR2LP62875 67 aaKnown RBP7.08□□□□□ -1.28
SF3B1-201ENST00000335508 TMEM110Q86TL2 294 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 FAM71DQ8N9W8 422 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 ANKLE1Q8NAG6 615 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 PHC3Q8NDX5 983 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 MGARPQ8TDB4 240 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 ALG3Q92685 438 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 ARHGAP39Q9C0H5 1083 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 PRDM12Q9H4Q4 367 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 MRPS23Q9Y3D9 190 aaKnown RBP7.08□□□□□ -1.28
SF3B1-201ENST00000335508 RNASEH1O60930 286 aaKnown RBP7.08□□□□□ -1.28
SF3B1-201ENST00000335508 CLDN11O75508 207 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 ATP5HO75947 161 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 HMBSP08397 361 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 PYGMP11217 842 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 CYP2F1P24903 491 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 L1CAMP32004 1257 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 FLT3P36888 993 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 GPD2P43304 727 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 SERPINB4P48594 390 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 MAGOHP61326 146 aaKnown RBP7.08□□□□□ -1.28
SF3B1-201ENST00000335508 RHOAP61586 193 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 DENND1BQ6P3S1 775 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 ILDR2Q71H61 639 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 XPO6Q96QU8 1125 aaKnown RBP7.08□□□□□ -1.28
SF3B1-201ENST00000335508 ADGRE3Q9BY15 652 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 UBE2OQ9C0C9 1292 aaKnown RBP7.08□□□□□ -1.28
SF3B1-201ENST00000335508 HSD3B7Q9H2F3 369 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 TRABDQ9H4I3 376 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 SUDS3Q9H7L9 328 aaPredicted RBP7.08□□□□□ -1.28
SF3B1-201ENST00000335508 MINDY3Q9H8M7 445 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 PDLIM7Q9NR12 457 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 SAGE1Q9NXZ1 904 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 FAM47DPA6NHR8 397 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 CRTAMO95727 393 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 CYBAP13498 195 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 GPR17Q13304 367 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 C3orf62Q6ZUJ4 267 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 TMEM174Q8WUU8 243 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 FAM167BQ9BTA0 163 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 SLC4A5Q9BY07 1137 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 GPR63Q9BZJ6 419 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 WWP1Q9H0M0 922 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 SMYD2Q9NRG4 433 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 LATS2Q9NRM7 1088 aa7.08□□□□□ -1.28
SF3B1-201ENST00000335508 A0A0A0MRY4 1105 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 PMPCBO75439 489 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 DCTN3O75935 186 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 SEC31AO94979 1220 aaKnown RBP7.07□□□□□ -1.28
SF3B1-201ENST00000335508 DDX5P17844 614 aaKnown RBP7.07□□□□□ -1.28
SF3B1-201ENST00000335508 NPY2RP49146 381 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 PRELID2Q8N945 189 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 CCDC126Q96EE4 140 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 BTN2A3PQ96KV6 586 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 SPATA13Q96N96 652 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 PCYT2Q99447 389 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 CINPQ9BW66 212 aaPredicted RBP7.07□□□□□ -1.28
SF3B1-201ENST00000335508 VCXQ9H320 206 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 ATXN3LQ9H3M9 355 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 UTP6Q9NYH9 597 aaKnown RBP7.07□□□□□ -1.28
SF3B1-201ENST00000335508 PKD2L2Q9NZM6 624 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 CDY1Q9Y6F8 540 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 E5RI56 91 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 LRCH4O75427 683 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 ZKSCAN8Q15776 578 aaPredicted RBP7.07□□□□□ -1.28
SF3B1-201ENST00000335508 POTEHQ6S545 545 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 RPAINQ86UA6 219 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 HJURPQ8NCD3 748 aaPredicted RBP7.07□□□□□ -1.28
SF3B1-201ENST00000335508 EDEM1Q92611 657 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 MCRS1Q96EZ8 462 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 SUSD3Q96L08 255 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 FIZ1Q96SL8 496 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 CENPKQ9BS16 269 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 PKP3Q9Y446 797 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 ZNF865P0CJ78 1059 aaPredicted RBP7.07□□□□□ -1.28
SF3B1-201ENST00000335508 WARSP23381 471 aaKnown RBP7.07□□□□□ -1.28
SF3B1-201ENST00000335508 TUBP50607 506 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 SLC29A2Q14542 456 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 ASTE1Q2TB18 679 aaPredicted RBP7.07□□□□□ -1.28
SF3B1-201ENST00000335508 DRICH1Q6PGQ1 229 aaPredicted RBP7.07□□□□□ -1.28
SF3B1-201ENST00000335508 NUDCD3Q8IVD9 361 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 ATAD1Q8NBU5 361 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 IPMKQ8NFU5 416 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 HASPINQ8TF76 798 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 CAVIN3Q969G5 261 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 KLHL29Q96CT2 875 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 SNRNP25Q9BV90 132 aaKnown RBP7.07□□□□□ -1.28
SF3B1-201ENST00000335508 RNF186Q9NXI6 227 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 CHMP2BQ9UQN3 213 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 KCNK1O00180 336 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 ZNF185O15231 689 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 HNRNPCL1O60812 293 aaKnown RBP7.07□□□□□ -1.28
SF3B1-201ENST00000335508 HSPA4LO95757 839 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms