RNA–Protein interactions for RNA: ENST00000333371.7

VPS33B-201, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33B, Length 2,767 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-201ENST00000333371 SIRPGQ9P1W8 387 aa12.75□□□□□ -0.37
VPS33B-201ENST00000333371 RPL26L1Q9UNX3 145 aaKnown RBP12.75□□□□□ -0.37
VPS33B-201ENST00000333371 PPME1Q9Y570 386 aa12.75□□□□□ -0.37
VPS33B-201ENST00000333371 KCNA4P22459 653 aa12.74□□□□□ -0.37
VPS33B-201ENST00000333371 SP100P23497 879 aaPredicted RBP12.74□□□□□ -0.37
VPS33B-201ENST00000333371 HDAC4P56524 1084 aa12.74□□□□□ -0.37
VPS33B-201ENST00000333371 RPL10AP62906 217 aaKnown RBP12.74□□□□□ -0.37
VPS33B-201ENST00000333371 SNAPC2Q13487 334 aa12.74□□□□□ -0.37
VPS33B-201ENST00000333371 BSPRYQ5W0U4 402 aa12.74□□□□□ -0.37
VPS33B-201ENST00000333371 RIPOR1Q6ZS17 1223 aa12.74□□□□□ -0.37
VPS33B-201ENST00000333371 SMC1BQ8NDV3 1235 aa12.74□□□□□ -0.37
VPS33B-201ENST00000333371 ZNF483Q8TF39 744 aaPredicted RBP12.74□□□□□ -0.37
VPS33B-201ENST00000333371 SLC10A4Q96EP9 437 aa12.74□□□□□ -0.37
VPS33B-201ENST00000333371 ZNF778Q96MU6 729 aa12.74□□□□□ -0.37
VPS33B-201ENST00000333371 TTC1Q99614 292 aa12.74□□□□□ -0.37
VPS33B-201ENST00000333371 ZNF408Q9H9D4 720 aa12.74□□□□□ -0.37
VPS33B-201ENST00000333371 GBA2Q9HCG7 927 aaPredicted RBP12.74□□□□□ -0.37
VPS33B-201ENST00000333371 KCNK4Q9NYG8 393 aa12.74□□□□□ -0.37
VPS33B-201ENST00000333371 TNFSF13BQ9Y275 285 aa12.74□□□□□ -0.37
VPS33B-201ENST00000333371 HBS1LQ9Y450 684 aaKnown RBP12.74□□□□□ -0.37
VPS33B-201ENST00000333371 KLF11O14901 512 aa12.74□□□□□ -0.37
VPS33B-201ENST00000333371 GAS2O43903 313 aaKnown RBP12.74□□□□□ -0.37
VPS33B-201ENST00000333371 SPAG6O75602 509 aa12.74□□□□□ -0.37
VPS33B-201ENST00000333371 CYP2F1P24903 491 aa12.74□□□□□ -0.37
VPS33B-201ENST00000333371 TTLL4Q14679 1199 aa12.74□□□□□ -0.37
VPS33B-201ENST00000333371 ACAP1Q15027 740 aa12.74□□□□□ -0.37
VPS33B-201ENST00000333371 OLFML1Q6UWY5 402 aa12.74□□□□□ -0.37
VPS33B-201ENST00000333371 DENND5BQ6ZUT9 1274 aa12.74□□□□□ -0.37
VPS33B-201ENST00000333371 PYROXD2Q8N2H3 581 aa12.74□□□□□ -0.37
VPS33B-201ENST00000333371 STKLD1Q8NE28 680 aa12.74□□□□□ -0.37
VPS33B-201ENST00000333371 SPDYE1Q8NFV5 336 aaPredicted RBP12.74□□□□□ -0.37
VPS33B-201ENST00000333371 DEPDC1BQ8WUY9 529 aa12.74□□□□□ -0.37
VPS33B-201ENST00000333371 C7orf26Q96N11 449 aa12.74□□□□□ -0.37
VPS33B-201ENST00000333371 MRPL45Q9BRJ2 306 aaKnown RBP12.74□□□□□ -0.37
VPS33B-201ENST00000333371 TUBB6Q9BUF5 446 aa12.74□□□□□ -0.37
VPS33B-201ENST00000333371 PDZD7Q9H5P4 517 aa12.74□□□□□ -0.37
VPS33B-201ENST00000333371 DHX35Q9H5Z1 703 aaKnown RBP12.74□□□□□ -0.37
VPS33B-201ENST00000333371 STX18Q9P2W9 335 aaKnown RBP12.74□□□□□ -0.37
VPS33B-201ENST00000333371 SLC7A8Q9UHI5 535 aa12.74□□□□□ -0.37
VPS33B-201ENST00000333371 BARX2Q9UMQ3 279 aaPredicted RBP12.74□□□□□ -0.37
VPS33B-201ENST00000333371 PLA2G4CQ9UP65 541 aa12.74□□□□□ -0.37
VPS33B-201ENST00000333371 DNAJC25-GNG10A0A024R161 153 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 WDR27A2RRH5 827 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 PAPSS1O43252 624 aaPredicted RBP12.73□□□□□ -0.37
VPS33B-201ENST00000333371 IL18RAPO95256 599 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 BPGMP07738 259 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 C6orf222P0C671 652 aaPredicted RBP12.73□□□□□ -0.37
VPS33B-201ENST00000333371 UBTFL6P0CB48 400 aaPredicted RBP12.73□□□□□ -0.37
VPS33B-201ENST00000333371 ARF4P18085 180 aaPredicted RBP12.73□□□□□ -0.37
VPS33B-201ENST00000333371 MRPS35P82673 323 aaKnown RBP12.73□□□□□ -0.37
VPS33B-201ENST00000333371 CASC4Q6P4E1 433 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 PLPPR4Q7Z2D5 763 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 ULK2Q8IYT8 1036 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 PPP1R13LQ8WUF5 828 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 USP6NLQ92738 828 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 NRDE2Q9H7Z3 1164 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 LGR5O75473 907 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 BAG2O95816 211 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 GSRP00390 522 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 CYP2C8P10632 490 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 SDC4P31431 198 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 CCNFP41002 786 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 PHKA2P46019 1235 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 SLC25A3Q00325 362 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 OLIG2Q13516 323 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 PEX6Q13608 980 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 TMEM132DQ14C87 1099 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 SLC9A4Q6AI14 798 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 KCNT2Q6UVM3 1135 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 LCLAT1Q6UWP7 414 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 CES3Q6UWW8 571 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 CRLF3Q8IUI8 442 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 MAP7D3Q8IWC1 876 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 SCUBE1Q8IWY4 988 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 EFCAB3Q8N7B9 438 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 CFAP61Q8NHU2 1237 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 RTP4Q96DX8 246 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 EBNA1BP2Q99848 306 aaKnown RBP12.73□□□□□ -0.37
VPS33B-201ENST00000333371 CCDC106Q9BWC9 280 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 SMARCAD1Q9H4L7 1026 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 TMPRSS4Q9NRS4 437 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 ZNF180Q9UJW8 692 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 PPM1HQ9ULR3 514 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 PSAT1Q9Y617 370 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 NUP205Q92621 2012 aa12.73□□□□□ -0.37
VPS33B-201ENST00000333371 BCLAF3A2AJT9 711 aaKnown RBP12.72□□□□□ -0.37
VPS33B-201ENST00000333371 ASB14A6NK59 587 aa12.72□□□□□ -0.37
VPS33B-201ENST00000333371 KRT38O76015 456 aa12.72□□□□□ -0.37
VPS33B-201ENST00000333371 ATG16L1Q676U5 607 aa12.72□□□□□ -0.37
VPS33B-201ENST00000333371 RSPH3Q86UC2 560 aa12.72□□□□□ -0.37
VPS33B-201ENST00000333371 TMPRSS6Q8IU80 811 aa12.72□□□□□ -0.37
VPS33B-201ENST00000333371 C7orf31Q8N865 590 aa12.72□□□□□ -0.37
VPS33B-201ENST00000333371 GSDMBQ8TAX9 411 aa12.72□□□□□ -0.37
VPS33B-201ENST00000333371 NT5C1AQ9BXI3 368 aa12.72□□□□□ -0.37
VPS33B-201ENST00000333371 DPP3Q9NY33 737 aa12.72□□□□□ -0.37
VPS33B-201ENST00000333371 EMCNQ9ULC0 261 aa12.72□□□□□ -0.37
VPS33B-201ENST00000333371 CLEC11AQ9Y240 323 aa12.72□□□□□ -0.37
VPS33B-201ENST00000333371 AKT3Q9Y243 479 aa12.72□□□□□ -0.37
VPS33B-201ENST00000333371 LRCH1Q9Y2L9 728 aa12.72□□□□□ -0.37
VPS33B-201ENST00000333371 FAM159BA6NKW6 160 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms