RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 CENPTQ96BT3 561 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 ERFP50548 548 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 RUNX1T1Q06455 604 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 LRRC55Q6ZSA7 311 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 HAS1Q92839 578 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 VPS50Q96JG6 964 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 NT5MQ9NPB1 228 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 DMAP1Q9NPF5 467 aaPredicted RBP13.13□□□□□ -0.31
PTCD1-201ENST00000292478 CARNS1A5YM72 827 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 PLA2G6O60733 806 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 SERPINF2P08697 491 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 PECAM1P16284 738 aaPredicted RBP13.13□□□□□ -0.31
PTCD1-201ENST00000292478 CYP2C18P33260 490 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 PCYT1AP49585 367 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 BMT2Q1RMZ1 405 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 ZNF284Q2VY69 593 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 TMPRSS6Q8IU80 811 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 MMADHCQ9H3L0 296 aaPredicted RBP13.13□□□□□ -0.31
PTCD1-201ENST00000292478 FAM198AQ9UFP1 575 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 DDX20Q9UHI6 824 aaKnown RBP13.13□□□□□ -0.31
PTCD1-201ENST00000292478 DPP7Q9UHL4 492 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 ERI2A8K979 691 aaKnown RBP13.13□□□□□ -0.31
PTCD1-201ENST00000292478 ANKRD63C9JTQ0 380 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 MAP3K6O95382 1288 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 DNAJC19Q96DA6 116 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 A1CFQ9NQ94 594 aaKnown RBP13.13□□□□□ -0.31
PTCD1-201ENST00000292478 SPASTQ9UBP0 616 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 ITM2BQ9Y287 266 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 STARD13Q9Y3M8 1113 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.13□□□□□ -0.31
PTCD1-201ENST00000292478 SYNDIG1LA6NDD5 238 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 SIGLEC16A6NMB1 481 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 DAB1O75553 588 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 SOAT1P35610 550 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 TBX4P57082 545 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 RTP1P59025 263 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 CDK16Q00536 496 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 MIIPQ5JXC2 388 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 CARNMT1Q8N4J0 409 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 EPS8L1Q8TE68 723 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 ASB2Q96Q27 587 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 P2RX7Q99572 595 aaKnown RBP13.13□□□□□ -0.31
PTCD1-201ENST00000292478 ASCC2Q9H1I8 757 aaPredicted RBP13.13□□□□□ -0.31
PTCD1-201ENST00000292478 POLG2Q9UHN1 485 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 AP4S1Q9Y587 144 aa13.13□□□□□ -0.31
PTCD1-201ENST00000292478 DDHD2O94830 711 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 AKR1A1P14550 325 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 ADIGQ0VDE8 80 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 MAD2L1Q13257 205 aaPredicted RBP13.12□□□□□ -0.31
PTCD1-201ENST00000292478 TADA1Q96BN2 335 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 PCYOX1Q9UHG3 505 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 TNFSF13BQ9Y275 285 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 ACTL7BQ9Y614 415 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 CNTNAP2Q9UHC6 1331 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 M0R3G1 203 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 MEIS2O14770 477 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 UBOX5O94941 541 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 HNRNPH3P31942 346 aaKnown RBP13.12□□□□□ -0.31
PTCD1-201ENST00000292478 TRPC1P48995 793 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 PRIM2P49643 509 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 RAP1GDS1P52306 607 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 FAM117BQ6P1L5 589 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 KYAT3Q6YP21 454 aaKnown RBP13.12□□□□□ -0.31
PTCD1-201ENST00000292478 CATSPERGQ6ZRH7 1159 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 NDEL1Q9GZM8 345 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 NMRAL1Q9HBL8 299 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 NMRK2Q9NPI5 230 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 CTNNAL1Q9UBT7 734 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 ZNF229Q9UJW7 825 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 VPS28Q9UK41 221 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 ROBO3Q96MS0 1386 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 PLSCR1O15162 318 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 CHADO15335 359 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 VPS4BO75351 444 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 SLC1A6P48664 564 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 NFYCQ13952 458 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 KCNMB4Q86W47 210 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 CENPLQ8N0S6 344 aaPredicted RBP13.12□□□□□ -0.31
PTCD1-201ENST00000292478 CASP10Q92851 521 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 DLGAP2Q9P1A6 1054 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 TRPV2Q9Y5S1 764 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 MYPNQ86TC9 1320 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 UBDO15205 165 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 TRIM13O60858 407 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 IFNA14P01570 189 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 MIPP30301 263 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 ARL4DP49703 201 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 PSEN2P49810 448 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 DEFA1P59665 94 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 DEFA3P59666 94 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 CNGA2Q16280 664 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 N4BP2L1Q5TBK1 243 aaPredicted RBP13.12□□□□□ -0.31
PTCD1-201ENST00000292478 RETSATQ6NUM9 610 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 ARMC6Q6NXE6 501 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 ILDR2Q71H61 639 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 FAM71AQ8IYT1 594 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 MREGQ8N565 214 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 DNAJB3Q8WWF6 145 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 TSPAN18Q96SJ8 248 aa13.12□□□□□ -0.31
PTCD1-201ENST00000292478 POPDC2Q9HBU9 364 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 414.9 ms