RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 GLP2RO95838 553 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 FCGR1AP12314 374 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 PGAM1P18669 254 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 DNAJB2P25686 324 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 HOXA10P31260 410 aaPredicted RBP11.04□□□□□ -0.64
CD44-201ENST00000263398 RGS2P41220 211 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 CDH8P55286 799 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 AMPD2Q01433 879 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 AUHQ13825 339 aaKnown RBP11.04□□□□□ -0.64
CD44-201ENST00000263398 FKBP1CQ5VVH2 108 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 ILDR2Q71H61 639 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 PLEKHH3Q7Z736 793 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 PACS2Q86VP3 889 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 FAM71AQ8IYT1 594 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 ZBTB45Q96K62 511 aaPredicted RBP11.04□□□□□ -0.64
CD44-201ENST00000263398 INPP4AQ96PE3 977 aaPredicted RBP11.04□□□□□ -0.64
CD44-201ENST00000263398 SH3GL1Q99961 368 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 PRKD2Q9BZL6 878 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 TAS2R14Q9NYV8 317 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 VTI1BQ9UEU0 232 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 MICAL2O94851 1124 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 CBX6O95503 412 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 ASS1P00966 412 aaKnown RBP11.04□□□□□ -0.64
CD44-201ENST00000263398 NPY2RP49146 381 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 GTF2A2P52657 109 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 HUNKP57058 714 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 GTF2BQ00403 316 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 ILF2Q12905 390 aaKnown RBP11.04□□□□□ -0.64
CD44-201ENST00000263398 HIST2H2ACQ16777 129 aaPredicted RBP11.04□□□□□ -0.64
CD44-201ENST00000263398 ATP6AP1LQ52LC2 224 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 SLC45A4Q5BKX6 768 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 DACT2Q5SW24 774 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 HIST2H2AA3Q6FI13 130 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 KCNT2Q6UVM3 1135 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 KYAT3Q6YP21 454 aaKnown RBP11.04□□□□□ -0.64
CD44-201ENST00000263398 REPS2Q8NFH8 660 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 STK32AQ8WU08 396 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 SHC3Q92529 594 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 ELMO3Q96BJ8 720 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 SYT15Q9BQS2 421 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 CLPBQ9H078 707 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 PDGFCQ9NRA1 345 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 NMRK1Q9NWW6 199 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 ASTN1O14525 1302 aa11.04□□□□□ -0.64
CD44-201ENST00000263398 TISP43B9A030 160 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 MEIS2O14770 477 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 MYBL2P10244 700 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 AMPD1P23109 780 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 SERPINB1P30740 379 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 ALDH5A1P51649 535 aaPredicted RBP11.03□□□□□ -0.64
CD44-201ENST00000263398 CDK16Q00536 496 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 DPYSL3Q14195 570 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 POLD3Q15054 466 aaPredicted RBP11.03□□□□□ -0.64
CD44-201ENST00000263398 MARC1Q5VT66 337 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 PRELID2Q8N945 189 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 TMEM237Q96Q45 408 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 PPP2R3BQ9Y5P8 575 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 HACD1B0YJ81 288 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 NR5A2O00482 541 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 NUDT17P0C025 328 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 CCR1P32246 355 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 PRIM2P49643 509 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 CACNA2D1P54289 1103 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 CSE1LP55060 971 aaKnown RBP11.03□□□□□ -0.64
CD44-201ENST00000263398 OXCT1P55809 520 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 PLIN5Q00G26 463 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 POU6F1Q14863 301 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 OASLQ15646 514 aaKnown RBP11.03□□□□□ -0.64
CD44-201ENST00000263398 CNGA2Q16280 664 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 IL17AQ16552 155 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 GALNTL6Q49A17 601 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 SPANXN3Q5MJ09 141 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 DDHD1Q8NEL9 900 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 LNX1Q8TBB1 728 aaPredicted RBP11.03□□□□□ -0.64
CD44-201ENST00000263398 PAWRQ96IZ0 340 aaKnown RBP11.03□□□□□ -0.64
CD44-201ENST00000263398 UBXN6Q9BZV1 441 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 MYLK2Q9H1R3 596 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 LRRC19Q9H756 370 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 RMND5AQ9H871 391 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 NT5MQ9NPB1 228 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 GPRC5DQ9NZD1 345 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 USP20Q9Y2K6 914 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 NCANO14594 1321 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 KCNK1O00180 336 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 EFCAB14O75071 495 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 CYP1A2P05177 515 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 ITGALP20701 1170 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 KDELR1P24390 212 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 MGAT1P26572 445 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 PBX1P40424 430 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 RENBPP51606 427 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 FKBP1AP62942 108 aaKnown RBP11.03□□□□□ -0.64
CD44-201ENST00000263398 DLG4P78352 724 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 SLC6A3Q01959 620 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 DDX39BQ13838 428 aaKnown RBP11.03□□□□□ -0.64
CD44-201ENST00000263398 CCDC81Q6ZN84 652 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 C15orf52Q6ZUT6 534 aaKnown RBP11.03□□□□□ -0.64
CD44-201ENST00000263398 LRRC8DQ7L1W4 858 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 KCNMB4Q86W47 210 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 TTC30AQ86WT1 665 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms