RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 BRD7Q9NPI1 651 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 CCNL1Q9UK58 526 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-216ENST00000637968 ISPDA4D126 451 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 ZBTB5O15062 677 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 SNRPAP09012 282 aaKnown RBP5.91□□□□□ -1.46
SCN1A-216ENST00000637968 IFI30P13284 250 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 HNRNPH3P31942 346 aaKnown RBP5.91□□□□□ -1.46
SCN1A-216ENST00000637968 RPL21P46778 160 aaKnown RBP5.91□□□□□ -1.46
SCN1A-216ENST00000637968 ARPP19P56211 112 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 KCNQ4P56696 695 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 EIF3EP60228 445 aaKnown RBP5.91□□□□□ -1.46
SCN1A-216ENST00000637968 CTDSPL2Q05D32 466 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 ART3Q13508 389 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 TOMM20Q15388 145 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 FAM47AQ5JRC9 791 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 SLC27A3Q5K4L6 730 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 LDLRAP1Q5SW96 308 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 DDX59Q5T1V6 619 aaKnown RBP eCLIP5.91□□□□□ -1.46
SCN1A-216ENST00000637968 IQSEC1Q6DN90 963 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 ERAP2Q6P179 960 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 ARSKQ6UWY0 536 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 C16orf89Q6UX73 402 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 FAM196AQ6ZSG2 479 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 LRRC71Q8N4P6 559 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 CCDC33Q8N5R6 958 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 TPCN2Q8NHX9 752 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 PSMA8Q8TAA3 256 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 EAF2Q96CJ1 260 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-216ENST00000637968 MTG1Q9BT17 334 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-216ENST00000637968 APOL5Q9BWW9 433 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 B3GNT4Q9C0J1 378 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 GOLPH3Q9H4A6 298 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 ATP13A2Q9NQ11 1180 aa5.91□□□□□ -1.46
SCN1A-216ENST00000637968 SUCOQ9UBS9 1254 aaKnown RBP5.91□□□□□ -1.46
SCN1A-216ENST00000637968 hCG_1642624A0A1W2PR95 340 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 CCDC182A6NF36 153 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 STX7O15400 261 aaKnown RBP5.9□□□□□ -1.46
SCN1A-216ENST00000637968 MAGEB2O15479 319 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 SULT1C4O75897 302 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 APOA4P06727 396 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 GSTM1P09488 218 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 CREB1P16220 341 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 STAT3P40763 770 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 ARL4CP56559 192 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 SSTP61278 116 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 UBXN2AP68543 259 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 POU6F2P78424 691 aaPredicted RBP5.9□□□□□ -1.46
SCN1A-216ENST00000637968 KLRC3Q07444 240 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 MOGSQ13724 837 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 Q3ZCU0 254 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 UGT3A1Q6NUS8 523 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 IGFN1Q86VF2 1251 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 PLD3Q8IV08 490 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 DEFB107AQ8IZN7 70 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 SHCBP1Q8NEM2 672 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 BEST2Q8NFU1 509 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 PDCD6IPQ8WUM4 868 aaKnown RBP5.9□□□□□ -1.46
SCN1A-216ENST00000637968 EDC3Q96F86 508 aaKnown RBP5.9□□□□□ -1.46
SCN1A-216ENST00000637968 CEP95Q96GE4 821 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 RNF17Q9BXT8 1623 aaKnown RBP5.9□□□□□ -1.46
SCN1A-216ENST00000637968 CPNE5Q9HCH3 593 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 SYTL2Q9HCH5 934 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 ADPRHL2Q9NX46 363 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 PSMC3IPQ9P2W1 217 aaPredicted RBP5.9□□□□□ -1.46
SCN1A-216ENST00000637968 EBF1Q9UH73 591 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 TMEM59LQ9UK28 342 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 TBC1D30Q9Y2I9 924 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 MYH8P13535 1937 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 AURKAO14965 403 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 ACAT1P24752 427 aaKnown RBP5.9□□□□□ -1.46
SCN1A-216ENST00000637968 MYBPC1Q00872 1141 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 USP49Q70CQ1 688 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.9□□□□□ -1.46
SCN1A-216ENST00000637968 SPATA20Q8TB22 786 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 SIPA1Q96FS4 1042 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 C9orf72Q96LT7 481 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 TBCBQ99426 244 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 C17orf62Q9BQA9 187 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 COG4Q9H9E3 785 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 CYP4F12Q9HCS2 524 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 HPS4Q9NQG7 708 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 ING3Q9NXR8 418 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 KCNK4Q9NYG8 393 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 MAT2BQ9NZL9 334 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 WHRNQ9P202 907 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 SRP68Q9UHB9 627 aaKnown RBP5.9□□□□□ -1.46
SCN1A-216ENST00000637968 MYH13Q9UKX3 1938 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 ZCCHC11Q5TAX3 1644 aaKnown RBP5.9□□□□□ -1.46
SCN1A-216ENST00000637968 ATP7BP35670 1465 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 ANKARQ7Z5J8 1434 aa5.9□□□□□ -1.46
SCN1A-216ENST00000637968 CCDC194A0A1B0GVG4 234 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 LRRC72A6NJI9 287 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 GOLGA8SH3BPF8 625 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 HDAC3O15379 428 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 PDE8AO60658 829 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 DNAJA2O60884 412 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 EGFRP00533 1210 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 HSPD1P10809 573 aaKnown RBP5.9□□□□□ -1.47
SCN1A-216ENST00000637968 CXCR2P25025 360 aa5.9□□□□□ -1.47
SCN1A-216ENST00000637968 STAT1P42224 750 aa5.9□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms