RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 KRT39Q6A163 491 aa16.97■□□□□ 0.31
CLN3-246ENST00000636228 KIAA1324Q6UXG2 1013 aaKnown RBP16.97■□□□□ 0.31
CLN3-246ENST00000636228 UNQ6494/PRO21346Q6UXR6 183 aa16.97■□□□□ 0.31
CLN3-246ENST00000636228 GUF1Q8N442 669 aaKnown RBP16.97■□□□□ 0.31
CLN3-246ENST00000636228 SLC4A11Q8NBS3 891 aa16.97■□□□□ 0.31
CLN3-246ENST00000636228 CCDC150Q8NCX0 1101 aa16.97■□□□□ 0.31
CLN3-246ENST00000636228 NDRG1Q92597 394 aaKnown RBP16.97■□□□□ 0.31
CLN3-246ENST00000636228 TATDN2Q93075 761 aa16.97■□□□□ 0.31
CLN3-246ENST00000636228 TMEM176AQ96HP8 235 aa16.97■□□□□ 0.31
CLN3-246ENST00000636228 MRGPRX1Q96LB2 322 aa16.97■□□□□ 0.31
CLN3-246ENST00000636228 HSPA12BQ96MM6 686 aa16.97■□□□□ 0.31
CLN3-246ENST00000636228 SCNM1Q9BWG6 230 aa16.97■□□□□ 0.31
CLN3-246ENST00000636228 GDPD2Q9HCC8 539 aa16.97■□□□□ 0.31
CLN3-246ENST00000636228 CISHQ9NSE2 258 aa16.97■□□□□ 0.31
CLN3-246ENST00000636228 CLEC4EQ9ULY5 219 aa16.97■□□□□ 0.31
CLN3-246ENST00000636228 SERPINF2P08697 491 aa16.96■□□□□ 0.31
CLN3-246ENST00000636228 MAOBP27338 520 aa16.96■□□□□ 0.31
CLN3-246ENST00000636228 CORO1AP31146 461 aaKnown RBP16.96■□□□□ 0.31
CLN3-246ENST00000636228 ATXN3P54252 364 aaPredicted RBP16.96■□□□□ 0.31
CLN3-246ENST00000636228 RAD23BP54727 409 aa16.96■□□□□ 0.31
CLN3-246ENST00000636228 GFPT1Q06210 699 aaPredicted RBP16.96■□□□□ 0.31
CLN3-246ENST00000636228 GEN1Q17RS7 908 aa16.96■□□□□ 0.31
CLN3-246ENST00000636228 ZCWPW2Q504Y3 356 aa16.96■□□□□ 0.31
CLN3-246ENST00000636228 FYB2Q5VWT5 728 aa16.96■□□□□ 0.31
CLN3-246ENST00000636228 DENND1CQ8IV53 801 aa16.96■□□□□ 0.31
CLN3-246ENST00000636228 RGL4Q8IZJ4 473 aa16.96■□□□□ 0.31
CLN3-246ENST00000636228 CEP76Q8TAP6 659 aa16.96■□□□□ 0.31
CLN3-246ENST00000636228 SLC32A1Q9H598 525 aa16.96■□□□□ 0.31
CLN3-246ENST00000636228 CAPN10Q9HC96 672 aa16.96■□□□□ 0.31
CLN3-246ENST00000636228 FBXO10Q9UK96 956 aa16.96■□□□□ 0.31
CLN3-246ENST00000636228 AGO1Q9UL18 857 aaKnown RBP16.96■□□□□ 0.31
CLN3-246ENST00000636228 STON1Q9Y6Q2 735 aa16.96■□□□□ 0.31
CLN3-246ENST00000636228 SLC12A8A0AV02 714 aa16.95■□□□□ 0.3
CLN3-246ENST00000636228 TULP2O00295 520 aa16.95■□□□□ 0.3
CLN3-246ENST00000636228 ZNF217O75362 1048 aa16.95■□□□□ 0.3
CLN3-246ENST00000636228 ZNF202O95125 648 aa16.95■□□□□ 0.3
CLN3-246ENST00000636228 PENKP01210 267 aaPredicted RBP16.95■□□□□ 0.3
CLN3-246ENST00000636228 PSEN1P49768 467 aa16.95■□□□□ 0.3
CLN3-246ENST00000636228 MFAP3P55082 362 aa16.95■□□□□ 0.3
CLN3-246ENST00000636228 FAM193AP78312 1265 aa16.95■□□□□ 0.3
CLN3-246ENST00000636228 SEMA3BQ13214 749 aa16.95■□□□□ 0.3
CLN3-246ENST00000636228 PIP4P1Q86T03 277 aa16.95■□□□□ 0.3
CLN3-246ENST00000636228 TADA2BQ86TJ2 420 aa16.95■□□□□ 0.3
CLN3-246ENST00000636228 PIGZQ86VD9 579 aa16.95■□□□□ 0.3
CLN3-246ENST00000636228 MINDY1Q8N5J2 469 aa16.95■□□□□ 0.3
CLN3-246ENST00000636228 RAB20Q9NX57 234 aa16.95■□□□□ 0.3
CLN3-246ENST00000636228 CLIC5Q9NZA1 410 aa16.95■□□□□ 0.3
CLN3-246ENST00000636228 ZMIZ1Q9ULJ6 1067 aa16.95■□□□□ 0.3
CLN3-246ENST00000636228 USP24Q9UPU5 2620 aa16.95■□□□□ 0.3
CLN3-246ENST00000636228 NUP205Q92621 2012 aa16.94■□□□□ 0.3
CLN3-246ENST00000636228 HYAL3O43820 417 aaPredicted RBP16.94■□□□□ 0.3
CLN3-246ENST00000636228 NDUFS2O75306 463 aa16.94■□□□□ 0.3
CLN3-246ENST00000636228 GTF2H1P32780 548 aa16.94■□□□□ 0.3
CLN3-246ENST00000636228 DPP6P42658 865 aa16.94■□□□□ 0.3
CLN3-246ENST00000636228 IL12RB1P42701 662 aa16.94■□□□□ 0.3
CLN3-246ENST00000636228 MXI1P50539 228 aa16.94■□□□□ 0.3
CLN3-246ENST00000636228 YWHAGP61981 247 aaKnown RBP eCLIP16.94■□□□□ 0.3
CLN3-246ENST00000636228 SIM1P81133 766 aaPredicted RBP16.94■□□□□ 0.3
CLN3-246ENST00000636228 COG7P83436 770 aa16.94■□□□□ 0.3
CLN3-246ENST00000636228 FUT11Q495W5 492 aa16.94■□□□□ 0.3
CLN3-246ENST00000636228 RSRC2Q7L4I2 434 aaKnown RBP16.94■□□□□ 0.3
CLN3-246ENST00000636228 HDDC3Q8N4P3 179 aa16.94■□□□□ 0.3
CLN3-246ENST00000636228 ZNF276Q8N554 614 aa16.94■□□□□ 0.3
CLN3-246ENST00000636228 FBXL13Q8NEE6 735 aa16.94■□□□□ 0.3
CLN3-246ENST00000636228 SORCS1Q8WY21 1168 aa16.94■□□□□ 0.3
CLN3-246ENST00000636228 ADAM33Q9BZ11 813 aa16.94■□□□□ 0.3
CLN3-246ENST00000636228 MARCH2Q9P0N8 246 aa16.94■□□□□ 0.3
CLN3-246ENST00000636228 ZNF510Q9Y2H8 683 aa16.94■□□□□ 0.3
CLN3-246ENST00000636228 FRYQ5TBA9 3013 aa16.94■□□□□ 0.3
CLN3-246ENST00000636228 A0A1W2PQ27 194 aa16.93■□□□□ 0.3
CLN3-246ENST00000636228 A0A1W2PQ64 194 aa16.93■□□□□ 0.3
CLN3-246ENST00000636228 A0A1W2PQD8 194 aa16.93■□□□□ 0.3
CLN3-246ENST00000636228 GFRA2O00451 464 aa16.93■□□□□ 0.3
CLN3-246ENST00000636228 ARHGAP33O14559 1287 aa16.93■□□□□ 0.3
CLN3-246ENST00000636228 TSPAN3O60637 253 aa16.93■□□□□ 0.3
CLN3-246ENST00000636228 OPHN1O60890 802 aa16.93■□□□□ 0.3
CLN3-246ENST00000636228 HOXD12P35452 270 aa16.93■□□□□ 0.3
CLN3-246ENST00000636228 CHKAP35790 457 aa16.93■□□□□ 0.3
CLN3-246ENST00000636228 TKTL1P51854 596 aa16.93■□□□□ 0.3
CLN3-246ENST00000636228 ENPEPQ07075 957 aa16.93■□□□□ 0.3
CLN3-246ENST00000636228 PNOCQ13519 176 aa16.93■□□□□ 0.3
CLN3-246ENST00000636228 GOLGA7BQ2TAP0 167 aa16.93■□□□□ 0.3
CLN3-246ENST00000636228 CBWD6Q4V339 395 aa16.93■□□□□ 0.3
CLN3-246ENST00000636228 RAB41Q5JT25 222 aa16.93■□□□□ 0.3
CLN3-246ENST00000636228 CBWD3Q5JTY5 395 aa16.93■□□□□ 0.3
CLN3-246ENST00000636228 CBWD5Q5RIA9 395 aa16.93■□□□□ 0.3
CLN3-246ENST00000636228 TCERG1LQ5VWI1 586 aa16.93■□□□□ 0.3
CLN3-246ENST00000636228 ARHGAP17Q68EM7 881 aa16.93■□□□□ 0.3
CLN3-246ENST00000636228 ZNF419Q96HQ0 510 aaPredicted RBP16.93■□□□□ 0.3
CLN3-246ENST00000636228 PIWIL1Q96J94 861 aaKnown RBP16.93■□□□□ 0.3
CLN3-246ENST00000636228 CAMK1GQ96NX5 476 aa16.93■□□□□ 0.3
CLN3-246ENST00000636228 TMEM121BQ9BXQ6 578 aaPredicted RBP16.93■□□□□ 0.3
CLN3-246ENST00000636228 ULBP1Q9BZM6 244 aa16.93■□□□□ 0.3
CLN3-246ENST00000636228 DNAI2Q9GZS0 605 aa16.93■□□□□ 0.3
CLN3-246ENST00000636228 MKRN2Q9H000 416 aaKnown RBP16.93■□□□□ 0.3
CLN3-246ENST00000636228 PRDM16Q9HAZ2 1276 aa16.93■□□□□ 0.3
CLN3-246ENST00000636228 THAP10Q9P2Z0 257 aaPredicted RBP16.93■□□□□ 0.3
CLN3-246ENST00000636228 SLC27A6Q9Y2P4 619 aa16.93■□□□□ 0.3
CLN3-246ENST00000636228 KCNJ18B7U540 433 aa16.92■□□□□ 0.3
CLN3-246ENST00000636228 CETN3O15182 167 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms