RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 HAUS4Q9H6D7 363 aa18.91■□□□□ 0.62
CLN3-239ENST00000628023 HEBP1Q9NRV9 189 aa18.91■□□□□ 0.62
CLN3-239ENST00000628023 MTF2Q9Y483 593 aaPredicted RBP18.91■□□□□ 0.62
CLN3-239ENST00000628023 GVINP1Q7Z2Y8 2422 aa18.91■□□□□ 0.62
CLN3-239ENST00000628023 EP300Q09472 2414 aaPredicted RBP18.9■□□□□ 0.62
CLN3-239ENST00000628023 SCAMP3O14828 347 aaKnown RBP18.9■□□□□ 0.62
CLN3-239ENST00000628023 CYP1A1P04798 512 aaPredicted RBP18.9■□□□□ 0.62
CLN3-239ENST00000628023 NCAM1P13591 858 aa18.9■□□□□ 0.62
CLN3-239ENST00000628023 CLEC16AQ2KHT3 1053 aa18.9■□□□□ 0.62
CLN3-239ENST00000628023 EFHC1Q5JVL4 640 aa18.9■□□□□ 0.62
CLN3-239ENST00000628023 MMS22LQ6ZRQ5 1243 aa18.9■□□□□ 0.62
CLN3-239ENST00000628023 ZDHHC17Q8IUH5 632 aa18.9■□□□□ 0.62
CLN3-239ENST00000628023 SLC30A5Q8TAD4 765 aa18.9■□□□□ 0.62
CLN3-239ENST00000628023 RIN3Q8TB24 985 aa18.9■□□□□ 0.62
CLN3-239ENST00000628023 ZFRQ96KR1 1074 aaKnown RBP18.9■□□□□ 0.62
CLN3-239ENST00000628023 PCDHB18PQ96TA0 734 aa18.9■□□□□ 0.62
CLN3-239ENST00000628023 KLF16Q9BXK1 252 aaPredicted RBP18.9■□□□□ 0.62
CLN3-239ENST00000628023 GKN1Q9NS71 199 aa18.9■□□□□ 0.62
CLN3-239ENST00000628023 DUS2Q9NX74 493 aaKnown RBP18.9■□□□□ 0.62
CLN3-239ENST00000628023 LSM7Q9UK45 103 aaKnown RBP18.9■□□□□ 0.62
CLN3-239ENST00000628023 WNT6Q9Y6F9 365 aa18.9■□□□□ 0.62
CLN3-239ENST00000628023 SLC12A8A0AV02 714 aa18.89■□□□□ 0.61
CLN3-239ENST00000628023 SLC9A3R1O14745 358 aaPredicted RBP18.89■□□□□ 0.61
CLN3-239ENST00000628023 AP5Z1O43299 807 aa18.89■□□□□ 0.61
CLN3-239ENST00000628023 HSF2BPO75031 334 aa18.89■□□□□ 0.61
CLN3-239ENST00000628023 HMBSP08397 361 aa18.89■□□□□ 0.61
CLN3-239ENST00000628023 SKILP12757 684 aa18.89■□□□□ 0.61
CLN3-239ENST00000628023 PRKCIP41743 596 aa18.89■□□□□ 0.61
CLN3-239ENST00000628023 RPS9P46781 194 aaKnown RBP18.89■□□□□ 0.61
CLN3-239ENST00000628023 ZNF75DP51815 510 aa18.89■□□□□ 0.61
CLN3-239ENST00000628023 YWHAZP63104 245 aaKnown RBP18.89■□□□□ 0.61
CLN3-239ENST00000628023 COG7P83436 770 aa18.89■□□□□ 0.61
CLN3-239ENST00000628023 ZXDBP98169 803 aa18.89■□□□□ 0.61
CLN3-239ENST00000628023 CSTF1Q05048 431 aaKnown RBP18.89■□□□□ 0.61
CLN3-239ENST00000628023 PDGFRLQ15198 375 aa18.89■□□□□ 0.61
CLN3-239ENST00000628023 TSR1Q2NL82 804 aaKnown RBP18.89■□□□□ 0.61
CLN3-239ENST00000628023 C2CD6Q53TS8 623 aa18.89■□□□□ 0.61
CLN3-239ENST00000628023 TRIM68Q6AZZ1 485 aa18.89■□□□□ 0.61
CLN3-239ENST00000628023 OLFML1Q6UWY5 402 aa18.89■□□□□ 0.61
CLN3-239ENST00000628023 OSCP1Q8WVF1 389 aa18.89■□□□□ 0.61
CLN3-239ENST00000628023 ATRIPQ8WXE1 791 aa18.89■□□□□ 0.61
CLN3-239ENST00000628023 SYN2Q92777 582 aaPredicted RBP18.89■□□□□ 0.61
CLN3-239ENST00000628023 CLDN23Q96B33 292 aa18.89■□□□□ 0.61
CLN3-239ENST00000628023 PIWIL1Q96J94 861 aaKnown RBP18.89■□□□□ 0.61
CLN3-239ENST00000628023 C11orf70Q9BRQ4 267 aa18.89■□□□□ 0.61
CLN3-239ENST00000628023 POPDC2Q9HBU9 364 aa18.89■□□□□ 0.61
CLN3-239ENST00000628023 BZW2Q9Y6E2 419 aaKnown RBP18.89■□□□□ 0.61
CLN3-239ENST00000628023 WDR87Q6ZQQ6 2873 aa18.88■□□□□ 0.61
CLN3-239ENST00000628023 E2F8A0AVK6 867 aa18.88■□□□□ 0.61
CLN3-239ENST00000628023 GOLGA8SH3BPF8 625 aa18.88■□□□□ 0.61
CLN3-239ENST00000628023 GRAP2O75791 330 aa18.88■□□□□ 0.61
CLN3-239ENST00000628023 SERPING1P05155 500 aa18.88■□□□□ 0.61
CLN3-239ENST00000628023 GLI1P08151 1106 aa18.88■□□□□ 0.61
CLN3-239ENST00000628023 UNGP13051 313 aaPredicted RBP18.88■□□□□ 0.61
CLN3-239ENST00000628023 TARSP26639 723 aaKnown RBP18.88■□□□□ 0.61
CLN3-239ENST00000628023 ID4P47928 161 aa18.88■□□□□ 0.61
CLN3-239ENST00000628023 SLC6A3Q01959 620 aa18.88■□□□□ 0.61
CLN3-239ENST00000628023 CENPCQ03188 943 aa18.88■□□□□ 0.61
CLN3-239ENST00000628023 FAM102AQ5T9C2 384 aaPredicted RBP18.88■□□□□ 0.61
CLN3-239ENST00000628023 VPS36Q86VN1 386 aa18.88■□□□□ 0.61
CLN3-239ENST00000628023 EBF3Q9H4W6 596 aa18.88■□□□□ 0.61
CLN3-239ENST00000628023 TRPV5Q9NQA5 729 aa18.88■□□□□ 0.61
CLN3-239ENST00000628023 ZNHIT6Q9NWK9 470 aaKnown RBP18.88■□□□□ 0.61
CLN3-239ENST00000628023 ASNSD1Q9NWL6 643 aa18.88■□□□□ 0.61
CLN3-239ENST00000628023 SFMBT1Q9UHJ3 866 aa18.88■□□□□ 0.61
CLN3-239ENST00000628023 NAALADL1Q9UQQ1 740 aa18.88■□□□□ 0.61
CLN3-239ENST00000628023 ARSAP15289 507 aa18.87■□□□□ 0.61
CLN3-239ENST00000628023 MMP8P22894 467 aa18.87■□□□□ 0.61
CLN3-239ENST00000628023 GABRB2P47870 512 aa18.87■□□□□ 0.61
CLN3-239ENST00000628023 KPNA1P52294 538 aaPredicted RBP18.87■□□□□ 0.61
CLN3-239ENST00000628023 TNK2Q07912 1038 aa18.87■□□□□ 0.61
CLN3-239ENST00000628023 DCAF6Q58WW2 860 aa18.87■□□□□ 0.61
CLN3-239ENST00000628023 PPP1R2P3Q6NXS1 205 aa18.87■□□□□ 0.61
CLN3-239ENST00000628023 MSANTD2Q6P1R3 559 aa18.87■□□□□ 0.61
CLN3-239ENST00000628023 ZNF571Q7Z3V5 609 aaPredicted RBP18.87■□□□□ 0.61
CLN3-239ENST00000628023 XYLT1Q86Y38 959 aa18.87■□□□□ 0.61
CLN3-239ENST00000628023 MAML2Q8IZL2 1156 aaPredicted RBP18.87■□□□□ 0.61
CLN3-239ENST00000628023 CPA6Q8N4T0 437 aa18.87■□□□□ 0.61
CLN3-239ENST00000628023 KIAA1958Q8N8K9 716 aa18.87■□□□□ 0.61
CLN3-239ENST00000628023 TTC8Q8TAM2 541 aa18.87■□□□□ 0.61
CLN3-239ENST00000628023 RUBCNQ92622 972 aa18.87■□□□□ 0.61
CLN3-239ENST00000628023 ATP2A3Q93084 1043 aa18.87■□□□□ 0.61
CLN3-239ENST00000628023 FAM83CQ9BQN1 747 aa18.87■□□□□ 0.61
CLN3-239ENST00000628023 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.87■□□□□ 0.61
CLN3-239ENST00000628023 ADAM22Q9P0K1 906 aa18.87■□□□□ 0.61
CLN3-239ENST00000628023 TBC1D14Q9P2M4 693 aa18.87■□□□□ 0.61
CLN3-239ENST00000628023 PCDHGA2Q9Y5H1 932 aa18.87■□□□□ 0.61
CLN3-239ENST00000628023 TMCO5BA8MYB1 307 aa18.86■□□□□ 0.61
CLN3-239ENST00000628023 MSI1O43347 362 aaKnown RBP18.86■□□□□ 0.61
CLN3-239ENST00000628023 MFAP3LO75121 409 aa18.86■□□□□ 0.61
CLN3-239ENST00000628023 DAB1O75553 588 aa18.86■□□□□ 0.61
CLN3-239ENST00000628023 NFATC1O95644 943 aa18.86■□□□□ 0.61
CLN3-239ENST00000628023 CALB1P05937 261 aa18.86■□□□□ 0.61
CLN3-239ENST00000628023 RNASE9P60153 205 aaKnown RBP18.86■□□□□ 0.61
CLN3-239ENST00000628023 RUNX3Q13761 415 aa18.86■□□□□ 0.61
CLN3-239ENST00000628023 PPP2R5DQ14738 602 aa18.86■□□□□ 0.61
CLN3-239ENST00000628023 TAF5Q15542 800 aa18.86■□□□□ 0.61
CLN3-239ENST00000628023 ITPRIPL2Q3MIP1 535 aa18.86■□□□□ 0.61
CLN3-239ENST00000628023 BEND5Q7L4P6 421 aa18.86■□□□□ 0.61
CLN3-239ENST00000628023 SLC26A9Q7LBE3 791 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms