RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 SNX25Q9H3E2 840 aa13□□□□□ -0.33
LIG1-221ENST00000613670 EBF3Q9H4W6 596 aa13□□□□□ -0.33
LIG1-221ENST00000613670 STK32BQ9NY57 414 aa13□□□□□ -0.33
LIG1-221ENST00000613670 TSPAN16Q9UKR8 245 aa13□□□□□ -0.33
LIG1-221ENST00000613670 SLC39A10Q9ULF5 831 aa13□□□□□ -0.33
LIG1-221ENST00000613670 PLA2G4CQ9UP65 541 aa13□□□□□ -0.33
LIG1-221ENST00000613670 TPP1O14773 563 aa13□□□□□ -0.33
LIG1-221ENST00000613670 SEC24DO94855 1032 aaPredicted RBP13□□□□□ -0.33
LIG1-221ENST00000613670 LAMTOR4Q0VGL1 99 aa13□□□□□ -0.33
LIG1-221ENST00000613670 SEPT6Q14141 434 aa13□□□□□ -0.33
LIG1-221ENST00000613670 PRKD1Q15139 912 aaPredicted RBP13□□□□□ -0.33
LIG1-221ENST00000613670 RPS6KA2Q15349 733 aa13□□□□□ -0.33
LIG1-221ENST00000613670 TBCCQ15814 346 aa13□□□□□ -0.33
LIG1-221ENST00000613670 ANKRD20A4Q4UJ75 823 aa13□□□□□ -0.33
LIG1-221ENST00000613670 CDCA2Q69YH5 1023 aaPredicted RBP13□□□□□ -0.33
LIG1-221ENST00000613670 DRICH1Q6PGQ1 229 aaPredicted RBP13□□□□□ -0.33
LIG1-221ENST00000613670 RTKN2Q8IZC4 609 aa13□□□□□ -0.33
LIG1-221ENST00000613670 RNF217Q8TC41 542 aa13□□□□□ -0.33
LIG1-221ENST00000613670 EXT2Q93063 718 aa13□□□□□ -0.33
LIG1-221ENST00000613670 TRAPPC9Q96Q05 1148 aa13□□□□□ -0.33
LIG1-221ENST00000613670 NTPCRQ9BSD7 190 aaKnown RBP13□□□□□ -0.33
LIG1-221ENST00000613670 HOXC10Q9NYD6 342 aa13□□□□□ -0.33
LIG1-221ENST00000613670 SLC17A6Q9P2U8 582 aa13□□□□□ -0.33
LIG1-221ENST00000613670 HBS1LQ9Y450 684 aaKnown RBP13□□□□□ -0.33
LIG1-221ENST00000613670 DCAF8L1A6NGE4 600 aa13□□□□□ -0.33
LIG1-221ENST00000613670 A6NHS1 94 aa13□□□□□ -0.33
LIG1-221ENST00000613670 ABLIM1O14639 778 aa13□□□□□ -0.33
LIG1-221ENST00000613670 TP73O15350 636 aa13□□□□□ -0.33
LIG1-221ENST00000613670 PEX10O60683 326 aa13□□□□□ -0.33
LIG1-221ENST00000613670 ERVK-10P10266 1014 aa13□□□□□ -0.33
LIG1-221ENST00000613670 NDST1P52848 882 aa13□□□□□ -0.33
LIG1-221ENST00000613670 RTP1P59025 263 aa13□□□□□ -0.33
LIG1-221ENST00000613670 YWHAZP63104 245 aaKnown RBP13□□□□□ -0.33
LIG1-221ENST00000613670 KRT72Q14CN4 511 aa13□□□□□ -0.33
LIG1-221ENST00000613670 SPDYAQ5MJ70 313 aa13□□□□□ -0.33
LIG1-221ENST00000613670 EFCAB12Q6NXP0 572 aa13□□□□□ -0.33
LIG1-221ENST00000613670 XRRA1Q6P2D8 792 aa13□□□□□ -0.33
LIG1-221ENST00000613670 UNC5AQ6ZN44 842 aa13□□□□□ -0.33
LIG1-221ENST00000613670 MARK2Q7KZI7 788 aaKnown RBP13□□□□□ -0.33
LIG1-221ENST00000613670 FBXO27Q8NI29 283 aa13□□□□□ -0.33
LIG1-221ENST00000613670 CNKSR2Q8WXI2 1034 aa13□□□□□ -0.33
LIG1-221ENST00000613670 RNF157Q96PX1 679 aa13□□□□□ -0.33
LIG1-221ENST00000613670 DDX60Q8IY21 1712 aaKnown RBP13□□□□□ -0.33
LIG1-221ENST00000613670 ATRNL1Q5VV63 1379 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 YDJCA8MPS7 323 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 WNT10BO00744 389 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 B4GALT5O43286 388 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 PEX1O43933 1283 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 NOL3O60936 208 aaKnown RBP12.99□□□□□ -0.33
LIG1-221ENST00000613670 HNRNPCP07910 306 aaKnown RBP eCLIP12.99□□□□□ -0.33
LIG1-221ENST00000613670 GTF2A2P52657 109 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 TPD52P55327 224 aaPredicted RBP12.99□□□□□ -0.33
LIG1-221ENST00000613670 CDC16Q13042 620 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 MXD4Q14582 209 aaPredicted RBP12.99□□□□□ -0.33
LIG1-221ENST00000613670 TMEM132DQ14C87 1099 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 NBPF12Q5TAG4 269 aaPredicted RBP12.99□□□□□ -0.33
LIG1-221ENST00000613670 FAM167AQ96KS9 214 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 NDNQ99608 321 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 PRPF18Q99633 342 aaKnown RBP12.99□□□□□ -0.33
LIG1-221ENST00000613670 FRMD8Q9BZ67 464 aaPredicted RBP12.99□□□□□ -0.33
LIG1-221ENST00000613670 GRIP2Q9C0E4 1043 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 FAM192AQ9GZU8 254 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 DEFB129Q9H1M3 183 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 CAAP1Q9H8G2 361 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 CDY2AQ9Y6F7 541 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 CDY1Q9Y6F8 540 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 AK5Q9Y6K8 562 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 ARAP2Q8WZ64 1704 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 CAPN8A6NHC0 703 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 SDR42E2A6NKP2 422 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 KCNK1O00180 336 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 BPGMP07738 259 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 DLDP09622 509 aaKnown RBP12.99□□□□□ -0.33
LIG1-221ENST00000613670 AVPR1AP37288 418 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 GLRA4Q5JXX5 417 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 IER5Q5VY09 327 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 UNC5BQ8IZJ1 945 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 C12orf29Q8N999 325 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 GORASP1Q9BQQ3 440 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 MMADHCQ9H3L0 296 aaPredicted RBP12.99□□□□□ -0.33
LIG1-221ENST00000613670 MYOZ2Q9NPC6 264 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 ZNF711Q9Y462 761 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 SERPINE1P05121 402 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 POLBP06746 335 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 CSH1P0DML2 217 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 CSH2P0DML3 217 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 PEX2P28328 305 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 R3HDM1Q15032 1099 aaKnown RBP12.99□□□□□ -0.33
LIG1-221ENST00000613670 EEF1DP3Q658K8 133 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 MPZL3Q6UWV2 235 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 CMC1Q7Z7K0 106 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 RELL1Q8IUW5 271 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 RYBPQ8N488 228 aaPredicted RBP12.99□□□□□ -0.33
LIG1-221ENST00000613670 AFAP1L2Q8N4X5 818 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 CPB2Q96IY4 423 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 WNK4Q96J92 1243 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 CDRT15Q96T59 188 aa12.99□□□□□ -0.33
LIG1-221ENST00000613670 CHADO15335 359 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 TGDSO95455 350 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 PMLP29590 882 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms