RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 AMACRQ9UHK6 382 aa14.84□□□□□ -0.03
USP39-220ENST00000613444 AP4E1Q9UPM8 1137 aa14.84□□□□□ -0.03
USP39-220ENST00000613444 SSX2IPQ9Y2D8 614 aa14.84□□□□□ -0.03
USP39-220ENST00000613444 RWDD3Q9Y3V2 267 aa14.84□□□□□ -0.03
USP39-220ENST00000613444 YIPF1Q9Y548 306 aa14.84□□□□□ -0.03
USP39-220ENST00000613444 DENND4CQ5VZ89 1909 aa14.84□□□□□ -0.03
USP39-220ENST00000613444 TJP3O95049 919 aa14.84□□□□□ -0.03
USP39-220ENST00000613444 SLC7A5Q01650 507 aa14.84□□□□□ -0.03
USP39-220ENST00000613444 CAMK1Q14012 370 aa14.84□□□□□ -0.03
USP39-220ENST00000613444 MSANTD2Q6P1R3 559 aa14.84□□□□□ -0.03
USP39-220ENST00000613444 LILRA6Q6PI73 481 aa14.84□□□□□ -0.03
USP39-220ENST00000613444 MAIP1Q8WWC4 291 aa14.84□□□□□ -0.03
USP39-220ENST00000613444 C1orf54Q8WWF1 131 aa14.84□□□□□ -0.03
USP39-220ENST00000613444 NTAN1Q96AB6 310 aa14.84□□□□□ -0.03
USP39-220ENST00000613444 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.84□□□□□ -0.03
USP39-220ENST00000613444 CLIC5Q9NZA1 410 aa14.84□□□□□ -0.03
USP39-220ENST00000613444 PCYOX1Q9UHG3 505 aa14.84□□□□□ -0.03
USP39-220ENST00000613444 FBXW11Q9UKB1 542 aa14.84□□□□□ -0.03
USP39-220ENST00000613444 RAB21Q9UL25 225 aa14.84□□□□□ -0.03
USP39-220ENST00000613444 MAFFQ9ULX9 164 aa14.84□□□□□ -0.03
USP39-220ENST00000613444 NR2E3Q9Y5X4 410 aa14.84□□□□□ -0.03
USP39-220ENST00000613444 BHMG1C9JSJ3 638 aaPredicted RBP14.83□□□□□ -0.04
USP39-220ENST00000613444 IRAK2O43187 625 aa14.83□□□□□ -0.04
USP39-220ENST00000613444 CXCL14O95715 111 aa14.83□□□□□ -0.04
USP39-220ENST00000613444 F9P00740 461 aa14.83□□□□□ -0.04
USP39-220ENST00000613444 CHRNA3P32297 505 aa14.83□□□□□ -0.04
USP39-220ENST00000613444 ADRA1BP35368 520 aa14.83□□□□□ -0.04
USP39-220ENST00000613444 SCAPQ12770 1279 aa14.83□□□□□ -0.04
USP39-220ENST00000613444 KCTD19Q17RG1 926 aaPredicted RBP14.83□□□□□ -0.04
USP39-220ENST00000613444 ODF2Q5BJF6 829 aa14.83□□□□□ -0.04
USP39-220ENST00000613444 BBS12Q6ZW61 710 aa14.83□□□□□ -0.04
USP39-220ENST00000613444 TMC7Q7Z402 723 aa14.83□□□□□ -0.04
USP39-220ENST00000613444 PYROXD2Q8N2H3 581 aa14.83□□□□□ -0.04
USP39-220ENST00000613444 ARHGAP18Q8N392 663 aa14.83□□□□□ -0.04
USP39-220ENST00000613444 POF1BQ8WVV4 589 aa14.83□□□□□ -0.04
USP39-220ENST00000613444 ATG4AQ8WYN0 398 aa14.83□□□□□ -0.04
USP39-220ENST00000613444 MAGOHBQ96A72 148 aaKnown RBP14.83□□□□□ -0.04
USP39-220ENST00000613444 KCTD15Q96SI1 283 aaPredicted RBP14.83□□□□□ -0.04
USP39-220ENST00000613444 TCF25Q9BQ70 676 aa14.83□□□□□ -0.04
USP39-220ENST00000613444 CALN1Q9BXU9 219 aa14.83□□□□□ -0.04
USP39-220ENST00000613444 DCLK3Q9C098 648 aa14.83□□□□□ -0.04
USP39-220ENST00000613444 FAM204AQ9H8W3 233 aa14.83□□□□□ -0.04
USP39-220ENST00000613444 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.83□□□□□ -0.04
USP39-220ENST00000613444 NUDT5Q9UKK9 219 aa14.83□□□□□ -0.04
USP39-220ENST00000613444 ZNF487B1APH4 448 aa14.83□□□□□ -0.04
USP39-220ENST00000613444 TGM5O43548 720 aa14.83□□□□□ -0.04
USP39-220ENST00000613444 CA3P07451 260 aa14.83□□□□□ -0.04
USP39-220ENST00000613444 COILP38432 576 aaPredicted RBP14.83□□□□□ -0.04
USP39-220ENST00000613444 PTGIRP43119 386 aa14.83□□□□□ -0.04
USP39-220ENST00000613444 MYRFLQ96LU7 910 aa14.83□□□□□ -0.04
USP39-220ENST00000613444 KLHL5Q96PQ7 755 aa14.83□□□□□ -0.04
USP39-220ENST00000613444 RNF157Q96PX1 679 aa14.83□□□□□ -0.04
USP39-220ENST00000613444 ZNF670Q9BS34 389 aa14.83□□□□□ -0.04
USP39-220ENST00000613444 DHX35Q9H5Z1 703 aaKnown RBP14.83□□□□□ -0.04
USP39-220ENST00000613444 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.83□□□□□ -0.04
USP39-220ENST00000613444 SFMBT1Q9UHJ3 866 aa14.83□□□□□ -0.04
USP39-220ENST00000613444 TNRC18O15417 2968 aaPredicted RBP14.82□□□□□ -0.04
USP39-220ENST00000613444 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.82□□□□□ -0.04
USP39-220ENST00000613444 C2orf71A6NGG8 1288 aa14.82□□□□□ -0.04
USP39-220ENST00000613444 HIDE1A8MVS5 230 aa14.82□□□□□ -0.04
USP39-220ENST00000613444 CST8O60676 142 aa14.82□□□□□ -0.04
USP39-220ENST00000613444 H2AFXP16104 143 aaPredicted RBP14.82□□□□□ -0.04
USP39-220ENST00000613444 FNTAP49354 379 aa14.82□□□□□ -0.04
USP39-220ENST00000613444 PSEN1P49768 467 aa14.82□□□□□ -0.04
USP39-220ENST00000613444 AIF1P55008 147 aa14.82□□□□□ -0.04
USP39-220ENST00000613444 KRT81Q14533 505 aa14.82□□□□□ -0.04
USP39-220ENST00000613444 CCNG2Q16589 344 aa14.82□□□□□ -0.04
USP39-220ENST00000613444 ANKRD20A8PQ5CZ79 823 aa14.82□□□□□ -0.04
USP39-220ENST00000613444 WDR93Q6P2C0 686 aa14.82□□□□□ -0.04
USP39-220ENST00000613444 CCDC137Q6PK04 289 aaKnown RBP14.82□□□□□ -0.04
USP39-220ENST00000613444 MAP7D3Q8IWC1 876 aa14.82□□□□□ -0.04
USP39-220ENST00000613444 PQLC3Q8N755 202 aa14.82□□□□□ -0.04
USP39-220ENST00000613444 MRPL43Q8N983 215 aaKnown RBP14.82□□□□□ -0.04
USP39-220ENST00000613444 PCDH19Q8TAB3 1148 aa14.82□□□□□ -0.04
USP39-220ENST00000613444 HINFPQ9BQA5 517 aa14.82□□□□□ -0.04
USP39-220ENST00000613444 PLEKHA4Q9H4M7 779 aa14.82□□□□□ -0.04
USP39-220ENST00000613444 TLR8Q9NR97 1041 aaKnown RBP14.82□□□□□ -0.04
USP39-220ENST00000613444 STIM2Q9P246 746 aa14.82□□□□□ -0.04
USP39-220ENST00000613444 INSL5Q9Y5Q6 135 aa14.82□□□□□ -0.04
USP39-220ENST00000613444 DOCK6Q96HP0 2047 aa14.82□□□□□ -0.04
USP39-220ENST00000613444 ZSCAN5CA6NGD5 496 aaPredicted RBP14.81□□□□□ -0.04
USP39-220ENST00000613444 TTI1O43156 1089 aa14.81□□□□□ -0.04
USP39-220ENST00000613444 RB1P06400 928 aa14.81□□□□□ -0.04
USP39-220ENST00000613444 RARGP13631 454 aa14.81□□□□□ -0.04
USP39-220ENST00000613444 KCNJ1P48048 391 aa14.81□□□□□ -0.04
USP39-220ENST00000613444 VSNL1P62760 191 aa14.81□□□□□ -0.04
USP39-220ENST00000613444 UBE3AQ05086 875 aa14.81□□□□□ -0.04
USP39-220ENST00000613444 SEMA3BQ13214 749 aa14.81□□□□□ -0.04
USP39-220ENST00000613444 PPP6R3Q5H9R7 873 aaPredicted RBP14.81□□□□□ -0.04
USP39-220ENST00000613444 SNX30Q5VWJ9 437 aa14.81□□□□□ -0.04
USP39-220ENST00000613444 FAM118BQ9BPY3 351 aa14.81□□□□□ -0.04
USP39-220ENST00000613444 UBE2OQ9C0C9 1292 aaKnown RBP14.81□□□□□ -0.04
USP39-220ENST00000613444 TLR9Q9NR96 1032 aa14.81□□□□□ -0.04
USP39-220ENST00000613444 CWC15Q9P013 229 aaKnown RBP14.81□□□□□ -0.04
USP39-220ENST00000613444 MAGED2Q9UNF1 606 aaPredicted RBP14.81□□□□□ -0.04
USP39-220ENST00000613444 YBX2Q9Y2T7 364 aaKnown RBP14.81□□□□□ -0.04
USP39-220ENST00000613444 PRRG1O14668 218 aa14.81□□□□□ -0.04
USP39-220ENST00000613444 GRM6O15303 877 aa14.81□□□□□ -0.04
USP39-220ENST00000613444 MSI1O43347 362 aaKnown RBP14.81□□□□□ -0.04
USP39-220ENST00000613444 ZMYND10O75800 440 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms