RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 CISD3P0C7P0 127 aa18.46■□□□□ 0.55
SHKBP1-223ENST00000600552 CD19P15391 556 aa18.46■□□□□ 0.55
SHKBP1-223ENST00000600552 ENGP17813 658 aa18.46■□□□□ 0.55
SHKBP1-223ENST00000600552 NDUFV2P19404 249 aa18.46■□□□□ 0.55
SHKBP1-223ENST00000600552 GTF2H1P32780 548 aa18.46■□□□□ 0.55
SHKBP1-223ENST00000600552 PSEN1P49768 467 aa18.46■□□□□ 0.55
SHKBP1-223ENST00000600552 RAD23BP54727 409 aa18.46■□□□□ 0.55
SHKBP1-223ENST00000600552 GOLGA7BQ2TAP0 167 aa18.46■□□□□ 0.55
SHKBP1-223ENST00000600552 SLC36A4Q6YBV0 504 aa18.46■□□□□ 0.55
SHKBP1-223ENST00000600552 CCDC186Q7Z3E2 898 aa18.46■□□□□ 0.55
SHKBP1-223ENST00000600552 PIGZQ86VD9 579 aa18.46■□□□□ 0.55
SHKBP1-223ENST00000600552 DENND1CQ8IV53 801 aa18.46■□□□□ 0.55
SHKBP1-223ENST00000600552 TSG101Q99816 390 aa18.46■□□□□ 0.55
SHKBP1-223ENST00000600552 PNPLA8Q9NP80 782 aa18.46■□□□□ 0.55
SHKBP1-223ENST00000600552 MARK1Q9P0L2 795 aa18.46■□□□□ 0.55
SHKBP1-223ENST00000600552 MARCH2Q9P0N8 246 aa18.46■□□□□ 0.55
SHKBP1-223ENST00000600552 STARD13Q9Y3M8 1113 aa18.46■□□□□ 0.55
SHKBP1-223ENST00000600552 ASCC3Q8N3C0 2202 aaKnown RBP18.45■□□□□ 0.54
SHKBP1-223ENST00000600552 GOLGA6L4A6NEF3 574 aa18.45■□□□□ 0.54
SHKBP1-223ENST00000600552 NDUFS2O75306 463 aa18.45■□□□□ 0.54
SHKBP1-223ENST00000600552 PRCPP42785 496 aa18.45■□□□□ 0.54
SHKBP1-223ENST00000600552 TKTL1P51854 596 aa18.45■□□□□ 0.54
SHKBP1-223ENST00000600552 SLC8A3P57103 927 aa18.45■□□□□ 0.54
SHKBP1-223ENST00000600552 YWHAGP61981 247 aaKnown RBP eCLIP18.45■□□□□ 0.54
SHKBP1-223ENST00000600552 COG7P83436 770 aa18.45■□□□□ 0.54
SHKBP1-223ENST00000600552 ZNF33AQ06730 810 aa18.45■□□□□ 0.54
SHKBP1-223ENST00000600552 EDRF1Q3B7T1 1238 aa18.45■□□□□ 0.54
SHKBP1-223ENST00000600552 ZCWPW2Q504Y3 356 aa18.45■□□□□ 0.54
SHKBP1-223ENST00000600552 KLHDC10Q6PID8 442 aa18.45■□□□□ 0.54
SHKBP1-223ENST00000600552 Q6ZNB5 142 aa18.45■□□□□ 0.54
SHKBP1-223ENST00000600552 RGL4Q8IZJ4 473 aa18.45■□□□□ 0.54
SHKBP1-223ENST00000600552 DUSP9Q99956 384 aaKnown RBP18.45■□□□□ 0.54
SHKBP1-223ENST00000600552 CD93Q9NPY3 652 aa18.45■□□□□ 0.54
SHKBP1-223ENST00000600552 EVLQ9UI08 416 aaPredicted RBP18.45■□□□□ 0.54
SHKBP1-223ENST00000600552 PILRBQ9UKJ0 227 aa18.45■□□□□ 0.54
SHKBP1-223ENST00000600552 STRIP2Q9ULQ0 834 aa18.45■□□□□ 0.54
SHKBP1-223ENST00000600552 USP3Q9Y6I4 520 aa18.45■□□□□ 0.54
SHKBP1-223ENST00000600552 IGHV1OR15-9A0A0B4J2B8 117 aa18.44■□□□□ 0.54
SHKBP1-223ENST00000600552 TULP2O00295 520 aa18.44■□□□□ 0.54
SHKBP1-223ENST00000600552 TOP3BO95985 862 aaKnown RBP18.44■□□□□ 0.54
SHKBP1-223ENST00000600552 GFPT1Q06210 699 aaPredicted RBP18.44■□□□□ 0.54
SHKBP1-223ENST00000600552 CBWD6Q4V339 395 aa18.44■□□□□ 0.54
SHKBP1-223ENST00000600552 CBWD3Q5JTY5 395 aa18.44■□□□□ 0.54
SHKBP1-223ENST00000600552 CBWD5Q5RIA9 395 aa18.44■□□□□ 0.54
SHKBP1-223ENST00000600552 ISM2Q6H9L7 571 aa18.44■□□□□ 0.54
SHKBP1-223ENST00000600552 ARHGAP18Q8N392 663 aa18.44■□□□□ 0.54
SHKBP1-223ENST00000600552 TTC39CQ8N584 583 aa18.44■□□□□ 0.54
SHKBP1-223ENST00000600552 TRIML1Q8N9V2 468 aa18.44■□□□□ 0.54
SHKBP1-223ENST00000600552 OR2I1PQ8NGU4 316 aa18.44■□□□□ 0.54
SHKBP1-223ENST00000600552 UBA3Q8TBC4 463 aa18.44■□□□□ 0.54
SHKBP1-223ENST00000600552 DDI1Q8WTU0 396 aa18.44■□□□□ 0.54
SHKBP1-223ENST00000600552 P2RY11Q96G91 374 aa18.44■□□□□ 0.54
SHKBP1-223ENST00000600552 HSPA12BQ96MM6 686 aa18.44■□□□□ 0.54
SHKBP1-223ENST00000600552 CDK5RAP1Q96SZ6 601 aaKnown RBP18.44■□□□□ 0.54
SHKBP1-223ENST00000600552 ULBP1Q9BZM6 244 aa18.44■□□□□ 0.54
SHKBP1-223ENST00000600552 DCLK3Q9C098 648 aa18.44■□□□□ 0.54
SHKBP1-223ENST00000600552 RMND1Q9NWS8 449 aa18.44■□□□□ 0.54
SHKBP1-223ENST00000600552 CLIC5Q9NZA1 410 aa18.44■□□□□ 0.54
SHKBP1-223ENST00000600552 AGO1Q9UL18 857 aaKnown RBP18.44■□□□□ 0.54
SHKBP1-223ENST00000600552 ZNF510Q9Y2H8 683 aa18.44■□□□□ 0.54
SHKBP1-223ENST00000600552 STON1Q9Y6Q2 735 aa18.44■□□□□ 0.54
SHKBP1-223ENST00000600552 TSPAN3O60637 253 aa18.43■□□□□ 0.54
SHKBP1-223ENST00000600552 CYBBP04839 570 aa18.43■□□□□ 0.54
SHKBP1-223ENST00000600552 CHKAP35790 457 aa18.43■□□□□ 0.54
SHKBP1-223ENST00000600552 ENPEPQ07075 957 aa18.43■□□□□ 0.54
SHKBP1-223ENST00000600552 STARD3Q14849 445 aa18.43■□□□□ 0.54
SHKBP1-223ENST00000600552 GEN1Q17RS7 908 aa18.43■□□□□ 0.54
SHKBP1-223ENST00000600552 DUOXA1Q1HG43 343 aa18.43■□□□□ 0.54
SHKBP1-223ENST00000600552 ANKRD40Q6AI12 368 aa18.43■□□□□ 0.54
SHKBP1-223ENST00000600552 CACUL1Q86Y37 369 aa18.43■□□□□ 0.54
SHKBP1-223ENST00000600552 HDDC3Q8N4P3 179 aa18.43■□□□□ 0.54
SHKBP1-223ENST00000600552 ANKRD52Q8NB46 1076 aa18.43■□□□□ 0.54
SHKBP1-223ENST00000600552 GABRG3Q99928 467 aa18.43■□□□□ 0.54
SHKBP1-223ENST00000600552 CIPCQ9C0C6 399 aa18.43■□□□□ 0.54
SHKBP1-223ENST00000600552 LRRC4Q9HBW1 653 aa18.43■□□□□ 0.54
SHKBP1-223ENST00000600552 SLC6A14Q9UN76 642 aa18.43■□□□□ 0.54
SHKBP1-223ENST00000600552 TNRC6BQ9UPQ9 1833 aaKnown RBP18.43■□□□□ 0.54
SHKBP1-223ENST00000600552 PLXND1Q9Y4D7 1925 aa18.43■□□□□ 0.54
SHKBP1-223ENST00000600552 TRIM49BA6NDI0 452 aa18.42■□□□□ 0.54
SHKBP1-223ENST00000600552 ZNF217O75362 1048 aa18.42■□□□□ 0.54
SHKBP1-223ENST00000600552 ZBED1O96006 694 aa18.42■□□□□ 0.54
SHKBP1-223ENST00000600552 CEACAM1P13688 526 aa18.42■□□□□ 0.54
SHKBP1-223ENST00000600552 MAOBP27338 520 aa18.42■□□□□ 0.54
SHKBP1-223ENST00000600552 PDE4CQ08493 712 aa18.42■□□□□ 0.54
SHKBP1-223ENST00000600552 SPDYCQ5MJ68 293 aa18.42■□□□□ 0.54
SHKBP1-223ENST00000600552 FYB2Q5VWT5 728 aa18.42■□□□□ 0.54
SHKBP1-223ENST00000600552 ARHGAP17Q68EM7 881 aa18.42■□□□□ 0.54
SHKBP1-223ENST00000600552 SLC23A3Q6PIS1 610 aa18.42■□□□□ 0.54
SHKBP1-223ENST00000600552 SLC41A1Q8IVJ1 513 aa18.42■□□□□ 0.54
SHKBP1-223ENST00000600552 SORCS1Q8WY21 1168 aa18.42■□□□□ 0.54
SHKBP1-223ENST00000600552 EDEM1Q92611 657 aa18.42■□□□□ 0.54
SHKBP1-223ENST00000600552 MRGPRX1Q96LB2 322 aa18.42■□□□□ 0.54
SHKBP1-223ENST00000600552 IPO9Q96P70 1041 aaKnown RBP18.42■□□□□ 0.54
SHKBP1-223ENST00000600552 SLC32A1Q9H598 525 aa18.42■□□□□ 0.54
SHKBP1-223ENST00000600552 HESX1Q9UBX0 185 aa18.42■□□□□ 0.54
SHKBP1-223ENST00000600552 SFMBT1Q9UHJ3 866 aa18.42■□□□□ 0.54
SHKBP1-223ENST00000600552 TSPAN16Q9UKR8 245 aa18.42■□□□□ 0.54
SHKBP1-223ENST00000600552 CLEC4EQ9ULY5 219 aa18.42■□□□□ 0.54
SHKBP1-223ENST00000600552 SPAARA0A1B0GVQ0 90 aa18.41■□□□□ 0.54
SHKBP1-223ENST00000600552 PIK3R2O00459 728 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms