RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 PFKPQ01813 784 aa20.18■□□□□ 0.82
UPF1-209ENST00000600310 NNTQ13423 1086 aa20.18■□□□□ 0.82
UPF1-209ENST00000600310 PDGFRLQ15198 375 aa20.18■□□□□ 0.82
UPF1-209ENST00000600310 TRIP4Q15650 581 aaPredicted RBP20.18■□□□□ 0.82
UPF1-209ENST00000600310 PHLDB2Q86SQ0 1253 aa20.18■□□□□ 0.82
UPF1-209ENST00000600310 TAC4Q86UU9 113 aa20.18■□□□□ 0.82
UPF1-209ENST00000600310 DNASE1L2Q92874 299 aa20.18■□□□□ 0.82
UPF1-209ENST00000600310 PLD4Q96BZ4 506 aa20.18■□□□□ 0.82
UPF1-209ENST00000600310 ASIC4Q96FT7 647 aa20.18■□□□□ 0.82
UPF1-209ENST00000600310 ZFYVE19Q96K21 471 aa20.18■□□□□ 0.82
UPF1-209ENST00000600310 SERPINB11Q96P15 392 aa20.18■□□□□ 0.82
UPF1-209ENST00000600310 PANX2Q96RD6 677 aa20.18■□□□□ 0.82
UPF1-209ENST00000600310 DUS2Q9NX74 493 aaKnown RBP20.18■□□□□ 0.82
UPF1-209ENST00000600310 RRN3Q9NYV6 651 aa20.18■□□□□ 0.82
UPF1-209ENST00000600310 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP20.18■□□□□ 0.82
UPF1-209ENST00000600310 TBC1D14Q9P2M4 693 aa20.18■□□□□ 0.82
UPF1-209ENST00000600310 NENFQ9UMX5 172 aa20.18■□□□□ 0.82
UPF1-209ENST00000600310 WNT6Q9Y6F9 365 aa20.18■□□□□ 0.82
UPF1-209ENST00000600310 SIGLEC16A6NMB1 481 aa20.17■□□□□ 0.82
UPF1-209ENST00000600310 SLC9A3R1O14745 358 aaPredicted RBP20.17■□□□□ 0.82
UPF1-209ENST00000600310 MSI1O43347 362 aaKnown RBP20.17■□□□□ 0.82
UPF1-209ENST00000600310 TRUB2O95900 331 aaKnown RBP20.17■□□□□ 0.82
UPF1-209ENST00000600310 IGLV3-27P01718 113 aa20.17■□□□□ 0.82
UPF1-209ENST00000600310 ALADP13716 330 aa20.17■□□□□ 0.82
UPF1-209ENST00000600310 RRM1P23921 792 aa20.17■□□□□ 0.82
UPF1-209ENST00000600310 EIF4EBP2Q13542 120 aaPredicted RBP20.17■□□□□ 0.82
UPF1-209ENST00000600310 SLC18A3Q16572 532 aa20.17■□□□□ 0.82
UPF1-209ENST00000600310 ALKBH5Q6P6C2 394 aaKnown RBP20.17■□□□□ 0.82
UPF1-209ENST00000600310 DNAAF5Q86Y56 855 aa20.17■□□□□ 0.82
UPF1-209ENST00000600310 EDAQ92838 391 aa20.17■□□□□ 0.82
UPF1-209ENST00000600310 DDX23Q9BUQ8 820 aaKnown RBP20.17■□□□□ 0.82
UPF1-209ENST00000600310 SELENOOQ9BVL4 669 aa20.17■□□□□ 0.82
UPF1-209ENST00000600310 DEF6Q9H4E7 631 aa20.17■□□□□ 0.82
UPF1-209ENST00000600310 NHEJ1Q9H9Q4 299 aaPredicted RBP20.17■□□□□ 0.82
UPF1-209ENST00000600310 METTL5Q9NRN9 209 aaKnown RBP20.17■□□□□ 0.82
UPF1-209ENST00000600310 LSM7Q9UK45 103 aaKnown RBP20.17■□□□□ 0.82
UPF1-209ENST00000600310 PI4K2BG5E9Z4 385 aa20.16■□□□□ 0.82
UPF1-209ENST00000600310 IRAK2O43187 625 aa20.16■□□□□ 0.82
UPF1-209ENST00000600310 KLKB1P03952 638 aa20.16■□□□□ 0.82
UPF1-209ENST00000600310 HMBSP08397 361 aa20.16■□□□□ 0.82
UPF1-209ENST00000600310 KRT3P12035 628 aa20.16■□□□□ 0.82
UPF1-209ENST00000600310 FECHP22830 423 aa20.16■□□□□ 0.82
UPF1-209ENST00000600310 FLT3P36888 993 aa20.16■□□□□ 0.82
UPF1-209ENST00000600310 IFNAR2P48551 515 aa20.16■□□□□ 0.82
UPF1-209ENST00000600310 TBX4P57082 545 aa20.16■□□□□ 0.82
UPF1-209ENST00000600310 PITX1P78337 314 aaPredicted RBP20.16■□□□□ 0.82
UPF1-209ENST00000600310 GFPT1Q06210 699 aaPredicted RBP20.16■□□□□ 0.82
UPF1-209ENST00000600310 RING1Q06587 406 aa20.16■□□□□ 0.82
UPF1-209ENST00000600310 CCDC122Q5T0U0 273 aa20.16■□□□□ 0.82
UPF1-209ENST00000600310 TRNP1Q6NT89 227 aa20.16■□□□□ 0.82
UPF1-209ENST00000600310 DNAJC24Q6P3W2 148 aa20.16■□□□□ 0.82
UPF1-209ENST00000600310 Q6ZNB5 142 aa20.16■□□□□ 0.82
UPF1-209ENST00000600310 SPC24Q8NBT2 197 aa20.16■□□□□ 0.82
UPF1-209ENST00000600310 ADAM32Q8TC27 787 aa20.16■□□□□ 0.82
UPF1-209ENST00000600310 NT5C3BQ969T7 300 aa20.16■□□□□ 0.82
UPF1-209ENST00000600310 OTUB2Q96DC9 234 aa20.16■□□□□ 0.82
UPF1-209ENST00000600310 TRIM11Q96F44 468 aa20.16■□□□□ 0.82
UPF1-209ENST00000600310 SLC39A13Q96H72 371 aa20.16■□□□□ 0.82
UPF1-209ENST00000600310 CCDC42Q96M95 316 aa20.16■□□□□ 0.82
UPF1-209ENST00000600310 NPY6RQ99463 290 aa20.16■□□□□ 0.82
UPF1-209ENST00000600310 DCLK3Q9C098 648 aa20.16■□□□□ 0.82
UPF1-209ENST00000600310 LINC00597Q9H2U6 94 aa20.16■□□□□ 0.82
UPF1-209ENST00000600310 HPS4Q9NQG7 708 aa20.16■□□□□ 0.82
UPF1-209ENST00000600310 WNT16Q9UBV4 365 aa20.16■□□□□ 0.82
UPF1-209ENST00000600310 STAP1Q9ULZ2 295 aa20.16■□□□□ 0.82
UPF1-209ENST00000600310 TLR6Q9Y2C9 796 aa20.16■□□□□ 0.82
UPF1-209ENST00000600310 SCAMP3O14828 347 aaKnown RBP20.15■□□□□ 0.82
UPF1-209ENST00000600310 AKR1B10O60218 316 aa20.15■□□□□ 0.82
UPF1-209ENST00000600310 MYBL1P10243 752 aa20.15■□□□□ 0.82
UPF1-209ENST00000600310 CORO1AP31146 461 aaKnown RBP20.15■□□□□ 0.82
UPF1-209ENST00000600310 EML3Q32P44 896 aa20.15■□□□□ 0.82
UPF1-209ENST00000600310 TRIM68Q6AZZ1 485 aa20.15■□□□□ 0.82
UPF1-209ENST00000600310 PLEKHA7Q6IQ23 1121 aa20.15■□□□□ 0.82
UPF1-209ENST00000600310 BBS7Q8IWZ6 715 aa20.15■□□□□ 0.82
UPF1-209ENST00000600310 JOSD2Q8TAC2 188 aa20.15■□□□□ 0.82
UPF1-209ENST00000600310 EBF3Q9H4W6 596 aa20.15■□□□□ 0.82
UPF1-209ENST00000600310 ZNF510Q9Y2H8 683 aa20.15■□□□□ 0.82
UPF1-209ENST00000600310 HELZP42694 1942 aaKnown RBP20.14■□□□□ 0.81
UPF1-209ENST00000600310 C2CD4BA6NLJ0 364 aa20.14■□□□□ 0.81
UPF1-209ENST00000600310 GJB6O95452 261 aa20.14■□□□□ 0.81
UPF1-209ENST00000600310 ARSAP15289 507 aa20.14■□□□□ 0.81
UPF1-209ENST00000600310 GBP1P32455 592 aa20.14■□□□□ 0.81
UPF1-209ENST00000600310 RFC1P35251 1148 aaPredicted RBP20.14■□□□□ 0.81
UPF1-209ENST00000600310 HARS2P49590 506 aaKnown RBP20.14■□□□□ 0.81
UPF1-209ENST00000600310 TNK2Q07912 1038 aa20.14■□□□□ 0.81
UPF1-209ENST00000600310 MAMLD1Q13495 774 aa20.14■□□□□ 0.81
UPF1-209ENST00000600310 RUNX3Q13761 415 aa20.14■□□□□ 0.81
UPF1-209ENST00000600310 SLC25A52Q3SY17 297 aa20.14■□□□□ 0.81
UPF1-209ENST00000600310 PPP1R15BQ5SWA1 713 aa20.14■□□□□ 0.81
UPF1-209ENST00000600310 NUGGCQ68CJ6 796 aa20.14■□□□□ 0.81
UPF1-209ENST00000600310 UNC45BQ8IWX7 931 aa20.14■□□□□ 0.81
UPF1-209ENST00000600310 ADGRG2Q8IZP9 1017 aa20.14■□□□□ 0.81
UPF1-209ENST00000600310 EMC1Q8N766 993 aa20.14■□□□□ 0.81
UPF1-209ENST00000600310 CSGALNACT1Q8TDX6 532 aa20.14■□□□□ 0.81
UPF1-209ENST00000600310 RXFP2Q8WXD0 754 aa20.14■□□□□ 0.81
UPF1-209ENST00000600310 ATP2A3Q93084 1043 aa20.14■□□□□ 0.81
UPF1-209ENST00000600310 ZNF653Q96CK0 615 aa20.14■□□□□ 0.81
UPF1-209ENST00000600310 PGAP3Q96FM1 320 aaPredicted RBP20.14■□□□□ 0.81
UPF1-209ENST00000600310 FCRL2Q96LA5 508 aaPredicted RBP20.14■□□□□ 0.81
UPF1-209ENST00000600310 FAM204AQ9H8W3 233 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms