RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 RAB41Q5JT25 222 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 TPGS2Q68CL5 300 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 RNF43Q68DV7 783 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 MMS22LQ6ZRQ5 1243 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 PHLDB2Q86SQ0 1253 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 TMEM110Q86TL2 294 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 PIGZQ86VD9 579 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 ERICH1Q86X53 443 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 CCAR2Q8N163 923 aaKnown RBP9.92□□□□□ -0.82
TRIM28-208ENST00000597172 SPPL2BQ8TCT7 592 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 C2orf15Q8WU43 125 aaKnown RBP9.92□□□□□ -0.82
TRIM28-208ENST00000597172 KCTD13Q8WZ19 329 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 ARHGEF26Q96DR7 871 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 SMARCD1Q96GM5 515 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 VCPIP1Q96JH7 1222 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 PPP1R13BQ96KQ4 1090 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 HSFY1Q96LI6 401 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 THAP2Q9H0W7 228 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 ARRDC1-AS1Q9H2J1 176 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 ABCB6Q9NP58 842 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 TRMT1Q9NXH9 659 aaKnown RBP9.92□□□□□ -0.82
TRIM28-208ENST00000597172 ADAM22Q9P0K1 906 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 AFF4Q9UHB7 1163 aaKnown RBP9.92□□□□□ -0.82
TRIM28-208ENST00000597172 CHORDC1Q9UHD1 332 aaPredicted RBP9.92□□□□□ -0.82
TRIM28-208ENST00000597172 SALL4Q9UJQ4 1053 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 INTUQ9ULD6 942 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 MSRB2Q9Y3D2 182 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 ASCC3Q8N3C0 2202 aaKnown RBP9.92□□□□□ -0.82
TRIM28-208ENST00000597172 DOCK6Q96HP0 2047 aa9.92□□□□□ -0.82
TRIM28-208ENST00000597172 ATP8B3O60423 1300 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 TCRBV5S1A1TA0A578 114 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 E5RJQ4 531 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 F8VP50 259 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 TNFRSF10BO14763 440 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 TGM5O43548 720 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 SOAT2O75908 522 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 CYP1A2P05177 515 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 CCDC175P0C221 793 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 TMEM253P0C7T8 217 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 HAPLN1P10915 354 aaPredicted RBP9.91□□□□□ -0.82
TRIM28-208ENST00000597172 PLA2G2AP14555 144 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 ATF2P15336 505 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 ABCB4P21439 1286 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 RRM1P23921 792 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 GRIK1P39086 918 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 GPR15P49685 360 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 CLCN4P51793 760 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 PFKPQ01813 784 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 CREMQ03060 361 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 ADCY1Q08828 1119 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 DDR2Q16832 855 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 CYP4A22Q5TCH4 519 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 SH3PXD2AQ5TCZ1 1133 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 SDHAF4Q5VUM1 108 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 VSTM1Q6UX27 236 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 ZNF852Q6ZMS4 543 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 ZNF662Q6ZS27 426 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 TPRG1Q6ZUI0 275 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 CEP68Q76N32 757 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 GPRIN1Q7Z2K8 1008 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 XYLT1Q86Y38 959 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 SCUBE3Q8IX30 993 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 C18orf8Q96DM3 657 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 C8orf48Q96LL4 319 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 C11orf70Q9BRQ4 267 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 EMILIN2Q9BXX0 1053 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 CYLDQ9NQC7 956 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 ST7Q9NRC1 585 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 TRIM10Q9UDY6 481 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 MRPS17Q9Y2R5 130 aaKnown RBP9.91□□□□□ -0.82
TRIM28-208ENST00000597172 CEP83Q9Y592 693 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 TICRRQ7Z2Z1 1910 aa9.91□□□□□ -0.82
TRIM28-208ENST00000597172 SHROOM3Q8TF72 1996 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 LAMA1P25391 3075 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 BTNL10A8MVZ5 291 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 CHURC1-FNTBB4DL54 471 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 PAPSS1O43252 624 aaPredicted RBP9.9□□□□□ -0.82
TRIM28-208ENST00000597172 ATMINO43313 823 aaPredicted RBP9.9□□□□□ -0.82
TRIM28-208ENST00000597172 IPO7O95373 1038 aaKnown RBP9.9□□□□□ -0.82
TRIM28-208ENST00000597172 PRB1P04280 392 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 CALB1P05937 261 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 SPATA31D3P0C874 917 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 LCP1P13796 627 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 FNTBP49356 437 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 CCR3P51677 355 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 SLC8A3P57103 927 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 ZNF268Q14587 947 aaPredicted RBP9.9□□□□□ -0.82
TRIM28-208ENST00000597172 TCEAL1Q15170 157 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 PLEKHA7Q6IQ23 1121 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 KIAA1211LQ6NV74 962 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 PPP1R2P3Q6NXS1 205 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 PARM1Q6UWI2 310 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 SPATA31D4Q6ZUB0 917 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 GET4Q7L5D6 327 aaPredicted RBP9.9□□□□□ -0.82
TRIM28-208ENST00000597172 KIAA1328Q86T90 577 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 SCN4BQ8IWT1 228 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 TCEAL8Q8IYN2 117 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 CLEC4CQ8WTT0 213 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 SMG7Q92540 1137 aaKnown RBP9.9□□□□□ -0.82
TRIM28-208ENST00000597172 NDRG1Q92597 394 aaKnown RBP9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms