RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 DEC1Q9P2X7 70 aa13.68□□□□□ -0.22
LIG1-212ENST00000596549 RWDD2AQ9UIY3 292 aa13.68□□□□□ -0.22
LIG1-212ENST00000596549 PIK3R2O00459 728 aa13.67□□□□□ -0.22
LIG1-212ENST00000596549 PENKP01210 267 aaPredicted RBP13.67□□□□□ -0.22
LIG1-212ENST00000596549 RGS7P49802 495 aa13.67□□□□□ -0.22
LIG1-212ENST00000596549 PUM1Q14671 1186 aaKnown RBP eCLIP13.67□□□□□ -0.221e-9■□□□□ 10.3
LIG1-212ENST00000596549 HSF5Q4G112 596 aaPredicted RBP13.67□□□□□ -0.22
LIG1-212ENST00000596549 PMF1Q6P1K2 205 aa13.67□□□□□ -0.22
LIG1-212ENST00000596549 GJB7Q6PEY0 223 aa13.67□□□□□ -0.22
LIG1-212ENST00000596549 ERMP1Q7Z2K6 904 aa13.67□□□□□ -0.22
LIG1-212ENST00000596549 FAM217AQ8IXS0 508 aa13.67□□□□□ -0.22
LIG1-212ENST00000596549 SIX6OS1Q8N1H7 587 aa13.67□□□□□ -0.22
LIG1-212ENST00000596549 SCML4Q8N228 414 aa13.67□□□□□ -0.22
LIG1-212ENST00000596549 OLIG1Q8TAK6 271 aa13.67□□□□□ -0.22
LIG1-212ENST00000596549 CLEC4CQ8WTT0 213 aa13.67□□□□□ -0.22
LIG1-212ENST00000596549 EDEM1Q92611 657 aa13.67□□□□□ -0.22
LIG1-212ENST00000596549 LOXL4Q96JB6 756 aa13.67□□□□□ -0.22
LIG1-212ENST00000596549 ACOX2Q99424 681 aa13.67□□□□□ -0.22
LIG1-212ENST00000596549 ARRDC1-AS1Q9H2J1 176 aa13.67□□□□□ -0.22
LIG1-212ENST00000596549 CLSTN2Q9H4D0 955 aa13.67□□□□□ -0.22
LIG1-212ENST00000596549 CD248Q9HCU0 757 aa13.67□□□□□ -0.22
LIG1-212ENST00000596549 CNGB3Q9NQW8 809 aa13.67□□□□□ -0.22
LIG1-212ENST00000596549 AGO1Q9UL18 857 aaKnown RBP13.67□□□□□ -0.22
LIG1-212ENST00000596549 KIAA1257Q9ULG3 409 aa13.67□□□□□ -0.22
LIG1-212ENST00000596549 CNTN6Q9UQ52 1028 aa13.67□□□□□ -0.22
LIG1-212ENST00000596549 INVSQ9Y283 1065 aa13.67□□□□□ -0.22
LIG1-212ENST00000596549 STARD13Q9Y3M8 1113 aa13.67□□□□□ -0.22
LIG1-212ENST00000596549 ABCA7Q8IZY2 2146 aa13.67□□□□□ -0.22
LIG1-212ENST00000596549 TCRBV21S2A2A0A5A6 115 aa13.66□□□□□ -0.22
LIG1-212ENST00000596549 SLC12A8A0AV02 714 aa13.66□□□□□ -0.22
LIG1-212ENST00000596549 TBC1D3BA6NDS4 549 aa13.66□□□□□ -0.22
LIG1-212ENST00000596549 MSI1O43347 362 aaKnown RBP13.66□□□□□ -0.22
LIG1-212ENST00000596549 GDF9O60383 454 aa13.66□□□□□ -0.22
LIG1-212ENST00000596549 CISD3P0C7P0 127 aa13.66□□□□□ -0.22
LIG1-212ENST00000596549 LCP1P13796 627 aa13.66□□□□□ -0.22
LIG1-212ENST00000596549 DGKGP49619 791 aa13.66□□□□□ -0.22
LIG1-212ENST00000596549 COG7P83436 770 aa13.66□□□□□ -0.22
LIG1-212ENST00000596549 APBA1Q02410 837 aa13.66□□□□□ -0.22
LIG1-212ENST00000596549 CETN1Q12798 172 aa13.66□□□□□ -0.22
LIG1-212ENST00000596549 SF3A2Q15428 464 aaKnown RBP13.66□□□□□ -0.22
LIG1-212ENST00000596549 TRIP4Q15650 581 aaPredicted RBP13.66□□□□□ -0.22
LIG1-212ENST00000596549 CNGA2Q16280 664 aa13.66□□□□□ -0.22
LIG1-212ENST00000596549 DPCR1Q3MIW9 517 aa13.66□□□□□ -0.22
LIG1-212ENST00000596549 EOGTQ5NDL2 527 aa13.66□□□□□ -0.22
LIG1-212ENST00000596549 PLA2G2CQ5R387 149 aa13.66□□□□□ -0.22
LIG1-212ENST00000596549 BSPRYQ5W0U4 402 aa13.66□□□□□ -0.22
LIG1-212ENST00000596549 PMS2CLQ68D20 193 aa13.66□□□□□ -0.22
LIG1-212ENST00000596549 RSRC2Q7L4I2 434 aaKnown RBP13.66□□□□□ -0.22
LIG1-212ENST00000596549 DENND1CQ8IV53 801 aa13.66□□□□□ -0.22
LIG1-212ENST00000596549 FMNL3Q8IVF7 1028 aa13.66□□□□□ -0.22
LIG1-212ENST00000596549 CPXM2Q8N436 756 aa13.66□□□□□ -0.22
LIG1-212ENST00000596549 PLD4Q96BZ4 506 aa13.66□□□□□ -0.22
LIG1-212ENST00000596549 XPO6Q96QU8 1125 aaKnown RBP13.66□□□□□ -0.22
LIG1-212ENST00000596549 SMOC1Q9H4F8 434 aa13.66□□□□□ -0.22
LIG1-212ENST00000596549 RXFP3Q9NSD7 469 aa13.66□□□□□ -0.22
LIG1-212ENST00000596549 SFMBT1Q9UHJ3 866 aa13.66□□□□□ -0.22
LIG1-212ENST00000596549 FBXO10Q9UK96 956 aa13.66□□□□□ -0.22
LIG1-212ENST00000596549 AJAP1Q9UKB5 411 aaPredicted RBP13.66□□□□□ -0.22
LIG1-212ENST00000596549 ADAMTS9Q9P2N4 1935 aa13.66□□□□□ -0.22
LIG1-212ENST00000596549 A0A1W2PQF6 199 aa13.65□□□□□ -0.22
LIG1-212ENST00000596549 MED19A0JLT2 244 aaPredicted RBP13.65□□□□□ -0.22
LIG1-212ENST00000596549 BECN2A8MW95 431 aa13.65□□□□□ -0.22
LIG1-212ENST00000596549 PRR5-ARHGAP8B1AHC4 643 aa13.65□□□□□ -0.22
LIG1-212ENST00000596549 HOXB2P14652 356 aa13.65□□□□□ -0.22
LIG1-212ENST00000596549 MPLP40238 635 aa13.65□□□□□ -0.22
LIG1-212ENST00000596549 WASP42768 502 aa13.65□□□□□ -0.22
LIG1-212ENST00000596549 MFAP3P55082 362 aa13.65□□□□□ -0.22
LIG1-212ENST00000596549 ARHGAP8P85298 464 aa13.65□□□□□ -0.22
LIG1-212ENST00000596549 STILQ15468 1287 aa13.65□□□□□ -0.22
LIG1-212ENST00000596549 MSANTD2Q6P1R3 559 aa13.65□□□□□ -0.22
LIG1-212ENST00000596549 TRIM65Q6PJ69 517 aa13.65□□□□□ -0.22
LIG1-212ENST00000596549 DGLUCYQ7Z3D6 616 aa13.65□□□□□ -0.22
LIG1-212ENST00000596549 FRMD1Q8N878 549 aa13.65□□□□□ -0.22
LIG1-212ENST00000596549 IPO9Q96P70 1041 aaKnown RBP13.65□□□□□ -0.22
LIG1-212ENST00000596549 CRACR2AQ9BSW2 395 aa13.65□□□□□ -0.22
LIG1-212ENST00000596549 ACP6Q9NPH0 428 aa13.65□□□□□ -0.22
LIG1-212ENST00000596549 OLA1Q9NTK5 396 aaKnown RBP13.65□□□□□ -0.22
LIG1-212ENST00000596549 WDR35Q9P2L0 1181 aa13.65□□□□□ -0.22
LIG1-212ENST00000596549 CDV3Q9UKY7 258 aaKnown RBP13.65□□□□□ -0.22
LIG1-212ENST00000596549 STRIP2Q9ULQ0 834 aa13.65□□□□□ -0.22
LIG1-212ENST00000596549 CLEC4EQ9ULY5 219 aa13.65□□□□□ -0.22
LIG1-212ENST00000596549 ZNF510Q9Y2H8 683 aa13.65□□□□□ -0.22
LIG1-212ENST00000596549 PCDH15Q96QU1 1955 aa13.65□□□□□ -0.22
LIG1-212ENST00000596549 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.64□□□□□ -0.23
LIG1-212ENST00000596549 GFRA2O00451 464 aa13.64□□□□□ -0.23
LIG1-212ENST00000596549 IGLV3-27P01718 113 aa13.64□□□□□ -0.23
LIG1-212ENST00000596549 GABRG2P18507 467 aa13.64□□□□□ -0.23
LIG1-212ENST00000596549 SLC9A1P19634 815 aa13.64□□□□□ -0.23
LIG1-212ENST00000596549 GBP1P32455 592 aa13.64□□□□□ -0.23
LIG1-212ENST00000596549 P2RY2P41231 377 aa13.64□□□□□ -0.23
LIG1-212ENST00000596549 RPL34P49207 117 aaKnown RBP13.64□□□□□ -0.23
LIG1-212ENST00000596549 ATXN1P54253 815 aaKnown RBP13.64□□□□□ -0.23
LIG1-212ENST00000596549 GEN1Q17RS7 908 aa13.64□□□□□ -0.23
LIG1-212ENST00000596549 PREPLQ4J6C6 727 aaPredicted RBP13.64□□□□□ -0.23
LIG1-212ENST00000596549 TCEAL6Q6IPX3 200 aa13.64□□□□□ -0.23
LIG1-212ENST00000596549 KIAA1211LQ6NV74 962 aa13.64□□□□□ -0.23
LIG1-212ENST00000596549 NETO1Q8TDF5 533 aa13.64□□□□□ -0.23
LIG1-212ENST00000596549 KCNV2Q8TDN2 545 aa13.64□□□□□ -0.23
LIG1-212ENST00000596549 HMGB4Q8WW32 186 aa13.64□□□□□ -0.23
LIG1-212ENST00000596549 RLN3Q8WXF3 142 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms