RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 TADA2BQ86TJ2 420 aa11.65□□□□□ -0.54
VRK3-210ENST00000596121 DENND1CQ8IV53 801 aa11.65□□□□□ -0.54
VRK3-210ENST00000596121 ETFBKMTQ8IXQ9 262 aa11.65□□□□□ -0.54
VRK3-210ENST00000596121 NAT16Q8N8M0 369 aa11.65□□□□□ -0.54
VRK3-210ENST00000596121 ADAM32Q8TC27 787 aa11.65□□□□□ -0.54
VRK3-210ENST00000596121 DQX1Q8TE96 717 aaKnown RBP11.65□□□□□ -0.54
VRK3-210ENST00000596121 RNF139Q8WU17 664 aa11.65□□□□□ -0.54
VRK3-210ENST00000596121 BAP1Q92560 729 aa11.65□□□□□ -0.54
VRK3-210ENST00000596121 CD101Q93033 1021 aa11.65□□□□□ -0.54
VRK3-210ENST00000596121 OTUB2Q96DC9 234 aa11.65□□□□□ -0.54
VRK3-210ENST00000596121 CDK5RAP1Q96SZ6 601 aaKnown RBP11.65□□□□□ -0.54
VRK3-210ENST00000596121 SPATA6Q9NWH7 488 aaPredicted RBP11.65□□□□□ -0.54
VRK3-210ENST00000596121 HCN2Q9UL51 889 aa11.65□□□□□ -0.54
VRK3-210ENST00000596121 GOLGA6L7A0A1B0GV03 622 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 GFRA2O00451 464 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 NCAM2O15394 837 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 HOXC11O43248 304 aaPredicted RBP11.64□□□□□ -0.55
VRK3-210ENST00000596121 GRAP2O75791 330 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 ADH1CP00326 375 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 IGLV3-27P01718 113 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 CYP1A1P04798 512 aaPredicted RBP11.64□□□□□ -0.55
VRK3-210ENST00000596121 TDGF1P13385 188 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 PBX1P40424 430 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 STAT1P42224 750 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 PTPN5P54829 565 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 YWHAZP63104 245 aaKnown RBP11.64□□□□□ -0.55
VRK3-210ENST00000596121 NOMO3P69849 1222 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 FANCCQ00597 558 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 SATB1Q01826 763 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 CDR2Q01850 454 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 NR1H3Q13133 447 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 DGKKQ5KSL6 1271 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 EMC10Q5UCC4 262 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 E4F1Q66K89 784 aaPredicted RBP11.64□□□□□ -0.55
VRK3-210ENST00000596121 C1orf228Q6PIY5 440 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 OLFML1Q6UWY5 402 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 MAMSTRQ6ZN01 415 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 TPGS1Q6ZTW0 290 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 IRF2BP2Q7Z5L9 587 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 TAC4Q86UU9 113 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 CPA5Q8WXQ8 436 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 FAM149B1Q96BN6 582 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 FCRL2Q96LA5 508 aaPredicted RBP11.64□□□□□ -0.55
VRK3-210ENST00000596121 SLC2A13Q96QE2 648 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 ADAM33Q9BZ11 813 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 TTYH3Q9C0H2 523 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 OLA1Q9NTK5 396 aaKnown RBP11.64□□□□□ -0.55
VRK3-210ENST00000596121 PLK2Q9NYY3 685 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 MARK1Q9P0L2 795 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 LSM7Q9UK45 103 aaKnown RBP11.64□□□□□ -0.55
VRK3-210ENST00000596121 STRIP2Q9ULQ0 834 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 CLEC4EQ9ULY5 219 aa11.64□□□□□ -0.55
VRK3-210ENST00000596121 HBS1LQ9Y450 684 aaKnown RBP11.64□□□□□ -0.55
VRK3-210ENST00000596121 VPS13AQ96RL7 3174 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 A0A0A0MRY4 1105 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 A0A1W2PQC6 194 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 RNF40O75150 1001 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 TULP3O75386 442 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 IGLV3-25P01717 112 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 CISD3P0C7P0 127 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 SP9P0CG40 484 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 NCAM1P13591 858 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 DRD1P21728 446 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 MAGEA9P43362 315 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 GABRB2P47870 512 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 ARID5AQ03989 594 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 CSTF1Q05048 431 aaKnown RBP11.63□□□□□ -0.55
VRK3-210ENST00000596121 GAD2Q05329 585 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 GOLGA8FQ08AF8 430 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 GOLGA8DPQ0D2H9 430 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 GRSF1Q12849 480 aaKnown RBP eCLIP11.63□□□□□ -0.55
VRK3-210ENST00000596121 EIF4EBP2Q13542 120 aaPredicted RBP11.63□□□□□ -0.55
VRK3-210ENST00000596121 LRRC32Q14392 662 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 ANO4Q32M45 955 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 OTUD1Q5VV17 481 aaPredicted RBP11.63□□□□□ -0.55
VRK3-210ENST00000596121 NAA35Q5VZE5 725 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 NADSYN1Q6IA69 706 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 OR6B2Q6IFH4 312 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 LRSAM1Q6UWE0 723 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 BEND5Q7L4P6 421 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 FAM217AQ8IXS0 508 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 DEFB106AQ8N104 65 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 TMEM35BQ8NCS4 154 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 BHMTQ93088 406 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 PLD4Q96BZ4 506 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 MYEOVQ96EZ4 313 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 SLC39A13Q96H72 371 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 SPAG5Q96R06 1193 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 PNKPQ96T60 521 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 PRRX2Q99811 253 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 SYT11Q9BT88 431 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 PRMT8Q9NR22 394 aaPredicted RBP11.63□□□□□ -0.55
VRK3-210ENST00000596121 CALCOCO1Q9P1Z2 691 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 XPO7Q9UIA9 1087 aaKnown RBP11.63□□□□□ -0.55
VRK3-210ENST00000596121 STOML2Q9UJZ1 356 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 DAAM1Q9Y4D1 1078 aa11.63□□□□□ -0.55
VRK3-210ENST00000596121 NEDD8-MDP1E9PL57 170 aa11.62□□□□□ -0.55
VRK3-210ENST00000596121 K7ESF4 209 aa11.62□□□□□ -0.55
VRK3-210ENST00000596121 SART1O43290 800 aaKnown RBP11.62□□□□□ -0.55
VRK3-210ENST00000596121 TSPAN3O60637 253 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms