RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 IRF2BP1Q8IU81 584 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 KREMEN1Q96MU8 473 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 PKP3Q9Y446 797 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 BCORQ6W2J9 1755 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 MAP3K13O43283 966 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 GFAPP14136 432 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 PTPN2P17706 415 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 PBX3P40426 434 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 NOMO3P69849 1222 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 MEA1Q16626 185 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 MARC1Q5VT66 337 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 DSG4Q86SJ6 1040 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 PHF13Q86YI8 300 aaPredicted RBP10.16□□□□□ -0.78
LIG3-216ENST00000593099 CRYGNQ8WXF5 182 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 ALKBH8Q96BT7 664 aaKnown RBP10.16□□□□□ -0.78
LIG3-216ENST00000593099 RILPQ96NA2 401 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 TGS1Q96RS0 853 aaKnown RBP10.16□□□□□ -0.78
LIG3-216ENST00000593099 TRIM54Q9BYV2 358 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 LHX5Q9H2C1 402 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 COL5A3P25940 1745 aaPredicted RBP10.16□□□□□ -0.78
LIG3-216ENST00000593099 O00370 1275 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 RPL17P18621 184 aaKnown RBP10.16□□□□□ -0.78
LIG3-216ENST00000593099 POLR2EP19388 210 aaKnown RBP10.16□□□□□ -0.78
LIG3-216ENST00000593099 ITIH2P19823 946 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 DNAAF5Q86Y56 855 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 TMEM192Q8IY95 271 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 KAT2BQ92831 832 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 PBXIP1Q96AQ6 731 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 SAMD11Q96NU1 681 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 ERVK-5Q9HDB9 667 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 SCUBE2Q9NQ36 999 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 ZFATQ9P243 1243 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 AAR2Q9Y312 384 aaKnown RBP10.16□□□□□ -0.78
LIG3-216ENST00000593099 DUSP10Q9Y6W6 482 aa10.16□□□□□ -0.78
LIG3-216ENST00000593099 ESYT3A0FGR9 886 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 DNAJC6O75061 913 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 TAC1P20366 129 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 KCNJ1P48048 391 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 FMO1Q01740 532 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 OTUD4Q01804 1114 aaKnown RBP10.15□□□□□ -0.78
LIG3-216ENST00000593099 ADCY2Q08462 1091 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 FUBP3Q96I24 572 aaKnown RBP eCLIP10.15□□□□□ -0.78
LIG3-216ENST00000593099 SUSD3Q96L08 255 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 C2orf49Q9BVC5 232 aaPredicted RBP10.15□□□□□ -0.78
LIG3-216ENST00000593099 FRMD8Q9BZ67 464 aaPredicted RBP10.15□□□□□ -0.78
LIG3-216ENST00000593099 FOXP3Q9BZS1 431 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 BRD8Q9H0E9 1235 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 R3HDMLQ9H3Y0 253 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 CNTN3Q9P232 1028 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 A0A087WUV0 522 aaPredicted RBP10.15□□□□□ -0.78
LIG3-216ENST00000593099 NDUFS3O75489 264 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 ZNF143P52747 638 aaPredicted RBP10.15□□□□□ -0.78
LIG3-216ENST00000593099 TBX2Q13207 712 aaPredicted RBP10.15□□□□□ -0.78
LIG3-216ENST00000593099 HP1BP3Q5SSJ5 553 aaPredicted RBP10.15□□□□□ -0.78
LIG3-216ENST00000593099 ANKRD20A3Q5VUR7 823 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 GET4Q7L5D6 327 aaPredicted RBP10.15□□□□□ -0.78
LIG3-216ENST00000593099 MAB21L3Q8N8X9 362 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 LRRC8CQ8TDW0 803 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 SUSD6Q92537 303 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 CELF6Q96J87 481 aaKnown RBP10.15□□□□□ -0.78
LIG3-216ENST00000593099 HNRNPABQ99729 332 aaKnown RBP10.15□□□□□ -0.78
LIG3-216ENST00000593099 SH3GL3Q99963 347 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 TSSK1BQ9BXA7 367 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 AGO3Q9H9G7 860 aaKnown RBP10.15□□□□□ -0.78
LIG3-216ENST00000593099 RGS18Q9NS28 235 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 RBM22Q9NW64 420 aaKnown RBP eCLIP10.15□□□□□ -0.78
LIG3-216ENST00000593099 AFF4Q9UHB7 1163 aaKnown RBP10.15□□□□□ -0.78
LIG3-216ENST00000593099 ZNF510Q9Y2H8 683 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 EPHB6O15197 1021 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 ZNF623O75123 536 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 GJB6O95452 261 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 TIMP1P01033 207 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 FNTAP49354 379 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 IL9RQ01113 521 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 MAP7Q14244 749 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 UGP2Q16851 508 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 MFSD5Q6N075 450 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 RASSF3Q86WH2 238 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 VCXQ9H320 206 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 BRD9Q9H8M2 597 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 NT5MQ9NPB1 228 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 MED4Q9NPJ6 270 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 FAM8A1Q9UBU6 413 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 XPO7Q9UIA9 1087 aaKnown RBP10.15□□□□□ -0.78
LIG3-216ENST00000593099 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.15□□□□□ -0.78
LIG3-216ENST00000593099 CAPN6Q9Y6Q1 641 aa10.15□□□□□ -0.78
LIG3-216ENST00000593099 TTI1O43156 1089 aa10.15□□□□□ -0.79
LIG3-216ENST00000593099 GPC4O75487 556 aa10.15□□□□□ -0.79
LIG3-216ENST00000593099 DAB1O75553 588 aa10.15□□□□□ -0.79
LIG3-216ENST00000593099 CCT5P48643 541 aa10.15□□□□□ -0.79
LIG3-216ENST00000593099 SLC11A1P49279 550 aa10.15□□□□□ -0.79
LIG3-216ENST00000593099 SYCP2LQ5T4T6 812 aa10.15□□□□□ -0.79
LIG3-216ENST00000593099 ACBD5Q5T8D3 534 aaPredicted RBP10.15□□□□□ -0.79
LIG3-216ENST00000593099 RAP1GAP2Q684P5 730 aa10.15□□□□□ -0.79
LIG3-216ENST00000593099 DENND1CQ8IV53 801 aa10.15□□□□□ -0.79
LIG3-216ENST00000593099 HJURPQ8NCD3 748 aaPredicted RBP10.15□□□□□ -0.79
LIG3-216ENST00000593099 BAP1Q92560 729 aa10.15□□□□□ -0.79
LIG3-216ENST00000593099 EXT2Q93063 718 aa10.15□□□□□ -0.79
LIG3-216ENST00000593099 ELAC1Q9H777 363 aaKnown RBP10.15□□□□□ -0.79
LIG3-216ENST00000593099 RMI1Q9H9A7 625 aa10.15□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms