RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 DDIT4Q9NX09 232 aa14.21□□□□□ -0.13
VMP1-210ENST00000589823 ANAPC7Q9UJX3 599 aa14.21□□□□□ -0.13
VMP1-210ENST00000589823 REXO2Q9Y3B8 237 aaKnown RBP14.21□□□□□ -0.13
VMP1-210ENST00000589823 HBS1LQ9Y450 684 aaKnown RBP14.21□□□□□ -0.13
VMP1-210ENST00000589823 ADGRG1Q9Y653 693 aa14.21□□□□□ -0.13
VMP1-210ENST00000589823 ANAPC1Q9H1A4 1944 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 SYNJ2BP-COX16A0A087WUM0 186 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 C2CD4DB7Z1M9 353 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 M0QYT0 321 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 PRAMEF12O95522 483 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 TRUB2O95900 331 aaKnown RBP14.2□□□□□ -0.14
VMP1-210ENST00000589823 F9P00740 461 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 HMBSP08397 361 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 CCDC175P0C221 793 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 PSMA2P25787 234 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 PTPN9P43378 593 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 KCNQ1P51787 676 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 ZNF143P52747 638 aaPredicted RBP14.2□□□□□ -0.14
VMP1-210ENST00000589823 TBX4P57082 545 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 DEUP1Q05D60 604 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 NME3Q13232 169 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 NNTQ13423 1086 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 TRIP4Q15650 581 aaPredicted RBP14.2□□□□□ -0.14
VMP1-210ENST00000589823 CCDC14Q49A88 953 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 TRNP1Q6NT89 227 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 POTEHQ6S545 545 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 SND1Q7KZF4 910 aaKnown RBP eCLIP14.2□□□□□ -0.147e-7■■■□□ 17
VMP1-210ENST00000589823 SLC35G2Q8TBE7 412 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 SH3RF2Q8TEC5 729 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 USP13Q92995 863 aaPredicted RBP14.2□□□□□ -0.14
VMP1-210ENST00000589823 RNF34Q969K3 372 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 E2F7Q96AV8 911 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 TBCBQ99426 244 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 NPY6RQ99463 290 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 CNPY3Q9BT09 278 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 KCNF1Q9H3M0 494 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 GKN1Q9NS71 199 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 COX16Q9P0S2 106 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 LCMT1Q9UIC8 334 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 SH3BP1Q9Y3L3 701 aa14.2□□□□□ -0.14
VMP1-210ENST00000589823 DENND4CQ5VZ89 1909 aa14.19□□□□□ -0.14
VMP1-210ENST00000589823 A0A0A6YYK5 440 aaPredicted RBP14.19□□□□□ -0.14
VMP1-210ENST00000589823 MYO1FO00160 1098 aa14.19□□□□□ -0.14
VMP1-210ENST00000589823 LEFTY2O00292 366 aa14.19□□□□□ -0.14
VMP1-210ENST00000589823 IRAK2O43187 625 aa14.19□□□□□ -0.14
VMP1-210ENST00000589823 MSI1O43347 362 aaKnown RBP14.19□□□□□ -0.14
VMP1-210ENST00000589823 IRF1P10914 325 aa14.19□□□□□ -0.14
VMP1-210ENST00000589823 RDXP35241 583 aaKnown RBP14.19□□□□□ -0.14
VMP1-210ENST00000589823 NOP2P46087 812 aaKnown RBP14.19□□□□□ -0.14
VMP1-210ENST00000589823 PITX1P78337 314 aaPredicted RBP14.19□□□□□ -0.14
VMP1-210ENST00000589823 ATP11AP98196 1134 aa14.19□□□□□ -0.14
VMP1-210ENST00000589823 KIF5AQ12840 1032 aa14.19□□□□□ -0.14
VMP1-210ENST00000589823 CDO1Q16878 200 aa14.19□□□□□ -0.14
VMP1-210ENST00000589823 C15orf59Q2T9L4 293 aaPredicted RBP14.19□□□□□ -0.14
VMP1-210ENST00000589823 STRADAQ7RTN6 431 aa14.19□□□□□ -0.14
VMP1-210ENST00000589823 ZDHHC14Q8IZN3 488 aa14.19□□□□□ -0.14
VMP1-210ENST00000589823 FNIP1Q8TF40 1166 aa14.19□□□□□ -0.14
VMP1-210ENST00000589823 NT5C3BQ969T7 300 aa14.19□□□□□ -0.14
VMP1-210ENST00000589823 PLD4Q96BZ4 506 aa14.19□□□□□ -0.14
VMP1-210ENST00000589823 PGAP3Q96FM1 320 aaPredicted RBP14.19□□□□□ -0.14
VMP1-210ENST00000589823 ZFRQ96KR1 1074 aaKnown RBP14.19□□□□□ -0.14
VMP1-210ENST00000589823 OBP2AQ9NY56 170 aa14.19□□□□□ -0.14
VMP1-210ENST00000589823 CFAP97Q9P2B7 532 aa14.19□□□□□ -0.14
VMP1-210ENST00000589823 PRKAG3Q9UGI9 489 aa14.19□□□□□ -0.14
VMP1-210ENST00000589823 IP6K2Q9UHH9 426 aa14.19□□□□□ -0.14
VMP1-210ENST00000589823 LSM7Q9UK45 103 aaKnown RBP14.19□□□□□ -0.14
VMP1-210ENST00000589823 TFR2Q9UP52 801 aa14.19□□□□□ -0.14
VMP1-210ENST00000589823 CCL26Q9Y258 94 aa14.19□□□□□ -0.14
VMP1-210ENST00000589823 TLR6Q9Y2C9 796 aa14.19□□□□□ -0.14
VMP1-210ENST00000589823 PAXBP1Q9Y5B6 917 aa14.19□□□□□ -0.14
VMP1-210ENST00000589823 HEPACAM2A8MVW5 462 aa14.18□□□□□ -0.14
VMP1-210ENST00000589823 BTNL10A8MVZ5 291 aa14.18□□□□□ -0.14
VMP1-210ENST00000589823 PJA2O43164 708 aa14.18□□□□□ -0.14
VMP1-210ENST00000589823 CCP110O43303 1012 aa14.18□□□□□ -0.14
VMP1-210ENST00000589823 ECI2O75521 394 aa14.18□□□□□ -0.14
VMP1-210ENST00000589823 STC2O76061 302 aa14.18□□□□□ -0.14
VMP1-210ENST00000589823 RNF8O76064 485 aa14.18□□□□□ -0.14
VMP1-210ENST00000589823 MTA2O94776 668 aa14.18□□□□□ -0.14
VMP1-210ENST00000589823 IGLV3-25P01717 112 aa14.18□□□□□ -0.14
VMP1-210ENST00000589823 APOEP02649 317 aa14.18□□□□□ -0.14
VMP1-210ENST00000589823 TCF3P15923 654 aa14.18□□□□□ -0.14
VMP1-210ENST00000589823 TFE3P19532 575 aaPredicted RBP14.18□□□□□ -0.14
VMP1-210ENST00000589823 VIPR2P41587 438 aa14.18□□□□□ -0.14
VMP1-210ENST00000589823 HARS2P49590 506 aaKnown RBP14.18□□□□□ -0.14
VMP1-210ENST00000589823 USP4Q13107 963 aa14.18□□□□□ -0.14
VMP1-210ENST00000589823 PIGHQ14442 188 aaPredicted RBP14.18□□□□□ -0.14
VMP1-210ENST00000589823 TCEAL1Q15170 157 aa14.18□□□□□ -0.14
VMP1-210ENST00000589823 NUGGCQ68CJ6 796 aa14.18□□□□□ -0.14
VMP1-210ENST00000589823 TANGO2Q6ICL3 276 aa14.18□□□□□ -0.14
VMP1-210ENST00000589823 PARM1Q6UWI2 310 aa14.18□□□□□ -0.14
VMP1-210ENST00000589823 ADHFE1Q8IWW8 467 aa14.18□□□□□ -0.14
VMP1-210ENST00000589823 UNC45BQ8IWX7 931 aa14.18□□□□□ -0.14
VMP1-210ENST00000589823 BPIFB1Q8TDL5 484 aa14.18□□□□□ -0.14
VMP1-210ENST00000589823 FAM172AQ8WUF8 416 aa14.18□□□□□ -0.14
VMP1-210ENST00000589823 NXPE3Q969Y0 559 aa14.18□□□□□ -0.14
VMP1-210ENST00000589823 ELSPBP1Q96BH3 223 aa14.18□□□□□ -0.14
VMP1-210ENST00000589823 CALR3Q96L12 384 aaKnown RBP14.18□□□□□ -0.14
VMP1-210ENST00000589823 ASB2Q96Q27 587 aa14.18□□□□□ -0.14
VMP1-210ENST00000589823 NCAPGQ9BPX3 1015 aa14.18□□□□□ -0.14
VMP1-210ENST00000589823 TSGA10Q9BZW7 698 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms