RNA–Protein interactions for RNA: ENST00000589753.1

ATG4D-211, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-211ENST00000589753 SLC7A9P82251 487 aa15.83■□□□□ 0.12
ATG4D-211ENST00000589753 ATP11AP98196 1134 aa15.83■□□□□ 0.12
ATG4D-211ENST00000589753 ZNF252P-AS1Q0IIN9 211 aa15.83■□□□□ 0.12
ATG4D-211ENST00000589753 CDO1Q16878 200 aa15.83■□□□□ 0.12
ATG4D-211ENST00000589753 C15orf59Q2T9L4 293 aaPredicted RBP15.83■□□□□ 0.12
ATG4D-211ENST00000589753 ARHGAP29Q52LW3 1261 aa15.83■□□□□ 0.12
ATG4D-211ENST00000589753 ADAM32Q8TC27 787 aa15.83■□□□□ 0.12
ATG4D-211ENST00000589753 PGAP3Q96FM1 320 aaPredicted RBP15.83■□□□□ 0.12
ATG4D-211ENST00000589753 CALR3Q96L12 384 aaKnown RBP15.83■□□□□ 0.12
ATG4D-211ENST00000589753 ZSWIM3Q96MP5 696 aa15.83■□□□□ 0.12
ATG4D-211ENST00000589753 LZTFL1Q9NQ48 299 aa15.83■□□□□ 0.12
ATG4D-211ENST00000589753 DDIT4Q9NX09 232 aa15.83■□□□□ 0.12
ATG4D-211ENST00000589753 SALL4Q9UJQ4 1053 aa15.83■□□□□ 0.12
ATG4D-211ENST00000589753 GUCA1BQ9UMX6 200 aa15.83■□□□□ 0.12
ATG4D-211ENST00000589753 REV3LO60673 3130 aa15.83■□□□□ 0.12
ATG4D-211ENST00000589753 DENND4AQ7Z401 1863 aa15.82■□□□□ 0.12
ATG4D-211ENST00000589753 SYNJ2BP-COX16A0A087WUM0 186 aa15.82■□□□□ 0.12
ATG4D-211ENST00000589753 SLC12A8A0AV02 714 aa15.82■□□□□ 0.12
ATG4D-211ENST00000589753 MACROD2A1Z1Q3 448 aa15.82■□□□□ 0.12
ATG4D-211ENST00000589753 IRAK2O43187 625 aa15.82■□□□□ 0.12
ATG4D-211ENST00000589753 MSI1O43347 362 aaKnown RBP15.82■□□□□ 0.12
ATG4D-211ENST00000589753 F9P00740 461 aa15.82■□□□□ 0.12
ATG4D-211ENST00000589753 IGLV3-25P01717 112 aa15.82■□□□□ 0.12
ATG4D-211ENST00000589753 GBP2P32456 591 aaPredicted RBP15.82■□□□□ 0.12
ATG4D-211ENST00000589753 KPNA1P52294 538 aaPredicted RBP15.82■□□□□ 0.12
ATG4D-211ENST00000589753 COG7P83436 770 aa15.82■□□□□ 0.12
ATG4D-211ENST00000589753 DEUP1Q05D60 604 aa15.82■□□□□ 0.12
ATG4D-211ENST00000589753 NME3Q13232 169 aa15.82■□□□□ 0.12
ATG4D-211ENST00000589753 NNTQ13423 1086 aa15.82■□□□□ 0.12
ATG4D-211ENST00000589753 PIGHQ14442 188 aaPredicted RBP15.82■□□□□ 0.12
ATG4D-211ENST00000589753 MESDQ14696 234 aa15.82■□□□□ 0.12
ATG4D-211ENST00000589753 ACAP1Q15027 740 aa15.82■□□□□ 0.12
ATG4D-211ENST00000589753 IFI16Q16666 785 aaKnown RBP15.82■□□□□ 0.12
ATG4D-211ENST00000589753 PUS10Q3MIT2 529 aaKnown RBP15.82■□□□□ 0.12
ATG4D-211ENST00000589753 OTUD1Q5VV17 481 aaPredicted RBP15.82■□□□□ 0.12
ATG4D-211ENST00000589753 POTEHQ6S545 545 aa15.82■□□□□ 0.12
ATG4D-211ENST00000589753 STRADAQ7RTN6 431 aa15.82■□□□□ 0.12
ATG4D-211ENST00000589753 BNIPLQ7Z465 357 aa15.82■□□□□ 0.12
ATG4D-211ENST00000589753 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.82■□□□□ 0.12
ATG4D-211ENST00000589753 ZSCAN18Q8TBC5 510 aaPredicted RBP15.82■□□□□ 0.12
ATG4D-211ENST00000589753 FAM172AQ8WUF8 416 aa15.82■□□□□ 0.12
ATG4D-211ENST00000589753 CENPIQ92674 756 aaPredicted RBP15.82■□□□□ 0.12
ATG4D-211ENST00000589753 MYADMQ96S97 322 aa15.82■□□□□ 0.12
ATG4D-211ENST00000589753 ADAM33Q9BZ11 813 aa15.82■□□□□ 0.12
ATG4D-211ENST00000589753 TMEM51Q9NW97 253 aa15.82■□□□□ 0.12
ATG4D-211ENST00000589753 SMPD4Q9NXE4 827 aa15.82■□□□□ 0.12
ATG4D-211ENST00000589753 TRMT1Q9NXH9 659 aaKnown RBP15.82■□□□□ 0.12
ATG4D-211ENST00000589753 COX16Q9P0S2 106 aa15.82■□□□□ 0.12
ATG4D-211ENST00000589753 HBS1LQ9Y450 684 aaKnown RBP15.82■□□□□ 0.12
ATG4D-211ENST00000589753 CPQQ9Y646 472 aa15.82■□□□□ 0.12
ATG4D-211ENST00000589753 ZFP37Q9Y6Q3 630 aaPredicted RBP15.82■□□□□ 0.12
ATG4D-211ENST00000589753 RNF8O76064 485 aa15.81■□□□□ 0.12
ATG4D-211ENST00000589753 PROSCO94903 275 aa15.81■□□□□ 0.12
ATG4D-211ENST00000589753 ENDOD1O94919 500 aa15.81■□□□□ 0.12
ATG4D-211ENST00000589753 WEE1P30291 646 aa15.81■□□□□ 0.12
ATG4D-211ENST00000589753 RDXP35241 583 aaKnown RBP15.81■□□□□ 0.12
ATG4D-211ENST00000589753 TRIP4Q15650 581 aaPredicted RBP15.81■□□□□ 0.12
ATG4D-211ENST00000589753 SH3PXD2AQ5TCZ1 1133 aa15.81■□□□□ 0.12
ATG4D-211ENST00000589753 PTCRAQ6ISU1 281 aaPredicted RBP15.81■□□□□ 0.12
ATG4D-211ENST00000589753 SND1Q7KZF4 910 aaKnown RBP eCLIP15.81■□□□□ 0.12
ATG4D-211ENST00000589753 OTOP3Q7RTS5 596 aa15.81■□□□□ 0.12
ATG4D-211ENST00000589753 ARID3BQ8IVW6 561 aaPredicted RBP15.81■□□□□ 0.12
ATG4D-211ENST00000589753 REXO1L1PQ8IX06 675 aa15.81■□□□□ 0.12
ATG4D-211ENST00000589753 CCAR2Q8N163 923 aaKnown RBP15.81■□□□□ 0.12
ATG4D-211ENST00000589753 RNF10Q8N5U6 811 aaKnown RBP15.81■□□□□ 0.12
ATG4D-211ENST00000589753 NIPA2Q8N8Q9 360 aa15.81■□□□□ 0.12
ATG4D-211ENST00000589753 TPCN2Q8NHX9 752 aa15.81■□□□□ 0.12
ATG4D-211ENST00000589753 ZFRQ96KR1 1074 aaKnown RBP15.81■□□□□ 0.12
ATG4D-211ENST00000589753 KLF16Q9BXK1 252 aaPredicted RBP15.81■□□□□ 0.12
ATG4D-211ENST00000589753 SMG9Q9H0W8 520 aaKnown RBP15.81■□□□□ 0.12
ATG4D-211ENST00000589753 PRDM6Q9NQX0 595 aa15.81■□□□□ 0.12
ATG4D-211ENST00000589753 PIGVQ9NUD9 493 aa15.81■□□□□ 0.12
ATG4D-211ENST00000589753 TDP1Q9NUW8 608 aa15.81■□□□□ 0.12
ATG4D-211ENST00000589753 CALCOCO1Q9P1Z2 691 aa15.81■□□□□ 0.12
ATG4D-211ENST00000589753 ARHGAP26Q9UNA1 814 aa15.81■□□□□ 0.12
ATG4D-211ENST00000589753 FAM50BQ9Y247 325 aa15.81■□□□□ 0.12
ATG4D-211ENST00000589753 TLR6Q9Y2C9 796 aa15.81■□□□□ 0.12
ATG4D-211ENST00000589753 PAXBP1Q9Y5B6 917 aa15.81■□□□□ 0.12
ATG4D-211ENST00000589753 TMEM110-MUSTN1A8MSY1 372 aa15.8■□□□□ 0.12
ATG4D-211ENST00000589753 BUB1BO60566 1050 aaPredicted RBP15.8■□□□□ 0.12
ATG4D-211ENST00000589753 MOCS3O95396 460 aa15.8■□□□□ 0.12
ATG4D-211ENST00000589753 HMBSP08397 361 aa15.8■□□□□ 0.12
ATG4D-211ENST00000589753 MAN1A1P33908 653 aa15.8■□□□□ 0.12
ATG4D-211ENST00000589753 TBX4P57082 545 aa15.8■□□□□ 0.12
ATG4D-211ENST00000589753 TFF2Q03403 129 aa15.8■□□□□ 0.12
ATG4D-211ENST00000589753 EIF4EBP2Q13542 120 aaPredicted RBP15.8■□□□□ 0.12
ATG4D-211ENST00000589753 SMAD2Q15796 467 aaKnown RBP15.8■□□□□ 0.12
ATG4D-211ENST00000589753 RAB6CQ53S08 254 aa15.8■□□□□ 0.12
ATG4D-211ENST00000589753 FAM78AQ5JUQ0 283 aa15.8■□□□□ 0.12
ATG4D-211ENST00000589753 DDX42Q86XP3 938 aaKnown RBP eCLIP15.8■□□□□ 0.12
ATG4D-211ENST00000589753 SMARCD2Q92925 531 aa15.8■□□□□ 0.12
ATG4D-211ENST00000589753 USP13Q92995 863 aaPredicted RBP15.8■□□□□ 0.12
ATG4D-211ENST00000589753 RNF34Q969K3 372 aa15.8■□□□□ 0.12
ATG4D-211ENST00000589753 PLD4Q96BZ4 506 aa15.8■□□□□ 0.12
ATG4D-211ENST00000589753 ACSF2Q96CM8 615 aaPredicted RBP15.8■□□□□ 0.12
ATG4D-211ENST00000589753 ASB16Q96NS5 453 aa15.8■□□□□ 0.12
ATG4D-211ENST00000589753 NCAPGQ9BPX3 1015 aa15.8■□□□□ 0.12
ATG4D-211ENST00000589753 RAB6CQ9H0N0 254 aa15.8■□□□□ 0.12
ATG4D-211ENST00000589753 KIF9Q9HAQ2 790 aa15.8■□□□□ 0.12
ATG4D-211ENST00000589753 GKN1Q9NS71 199 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms