RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 ZNF510Q9Y2H8 683 aa21.49■■□□□ 1.03
SHMT1-209ENST00000582653 THADAQ6YHU6 1953 aa21.48■■□□□ 1.03
SHMT1-209ENST00000582653 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa21.48■■□□□ 1.03
SHMT1-209ENST00000582653 KLKB1P03952 638 aa21.48■■□□□ 1.03
SHMT1-209ENST00000582653 CISD3P0C7P0 127 aa21.48■■□□□ 1.03
SHMT1-209ENST00000582653 CD19P15391 556 aa21.48■■□□□ 1.03
SHMT1-209ENST00000582653 KCNA4P22459 653 aa21.48■■□□□ 1.03
SHMT1-209ENST00000582653 TKTL1P51854 596 aa21.48■■□□□ 1.03
SHMT1-209ENST00000582653 IRX4P78413 519 aa21.48■■□□□ 1.03
SHMT1-209ENST00000582653 MORC3Q14149 939 aa21.48■■□□□ 1.03
SHMT1-209ENST00000582653 SGO2Q562F6 1265 aa21.48■■□□□ 1.03
SHMT1-209ENST00000582653 DAB2IPQ5VWQ8 1189 aa21.48■■□□□ 1.03
SHMT1-209ENST00000582653 SDE2Q6IQ49 451 aa21.48■■□□□ 1.03
SHMT1-209ENST00000582653 TMEFF1Q8IYR6 380 aa21.48■■□□□ 1.03
SHMT1-209ENST00000582653 UBR7Q8N806 425 aa21.48■■□□□ 1.03
SHMT1-209ENST00000582653 UBA3Q8TBC4 463 aa21.48■■□□□ 1.03
SHMT1-209ENST00000582653 PIGKQ92643 395 aa21.48■■□□□ 1.03
SHMT1-209ENST00000582653 P2RY11Q96G91 374 aa21.48■■□□□ 1.03
SHMT1-209ENST00000582653 CEP63Q96MT8 703 aa21.48■■□□□ 1.03
SHMT1-209ENST00000582653 PLK2Q9NYY3 685 aa21.48■■□□□ 1.03
SHMT1-209ENST00000582653 CIZ1Q9ULV3 898 aaPredicted RBP21.48■■□□□ 1.03
SHMT1-209ENST00000582653 CTNND2Q9UQB3 1225 aa21.48■■□□□ 1.03
SHMT1-209ENST00000582653 A0A1W2PQF6 199 aa21.47■■□□□ 1.03
SHMT1-209ENST00000582653 PATE3B3GLJ2 98 aa21.47■■□□□ 1.03
SHMT1-209ENST00000582653 PRRT4C9JH25 899 aa21.47■■□□□ 1.03
SHMT1-209ENST00000582653 CDX4O14627 284 aaPredicted RBP21.47■■□□□ 1.03
SHMT1-209ENST00000582653 HOXB2P14652 356 aa21.47■■□□□ 1.03
SHMT1-209ENST00000582653 WASP42768 502 aa21.47■■□□□ 1.03
SHMT1-209ENST00000582653 STX17P56962 302 aa21.47■■□□□ 1.03
SHMT1-209ENST00000582653 SLC8A3P57103 927 aa21.47■■□□□ 1.03
SHMT1-209ENST00000582653 YWHAGP61981 247 aaKnown RBP eCLIP21.47■■□□□ 1.03
SHMT1-209ENST00000582653 TOGARAM2Q6ZUX3 1019 aa21.47■■□□□ 1.03
SHMT1-209ENST00000582653 ULBP1Q9BZM6 244 aa21.47■■□□□ 1.03
SHMT1-209ENST00000582653 EVLQ9UI08 416 aaPredicted RBP21.47■■□□□ 1.03
SHMT1-209ENST00000582653 ZBTB24O43167 697 aaPredicted RBP21.46■■□□□ 1.03
SHMT1-209ENST00000582653 ZBED1O96006 694 aa21.46■■□□□ 1.03
SHMT1-209ENST00000582653 GABRG2P18507 467 aa21.46■■□□□ 1.03
SHMT1-209ENST00000582653 PMLP29590 882 aa21.46■■□□□ 1.03
SHMT1-209ENST00000582653 CHKAP35790 457 aa21.46■■□□□ 1.03
SHMT1-209ENST00000582653 PPP1R2P41236 205 aa21.46■■□□□ 1.03
SHMT1-209ENST00000582653 PTGER3P43115 390 aa21.46■■□□□ 1.03
SHMT1-209ENST00000582653 DGKGP49619 791 aa21.46■■□□□ 1.03
SHMT1-209ENST00000582653 YWHAEP62258 255 aaKnown RBP21.46■■□□□ 1.03
SHMT1-209ENST00000582653 EGFLAMQ63HQ2 1017 aa21.46■■□□□ 1.03
SHMT1-209ENST00000582653 SYT12Q8IV01 421 aa21.46■■□□□ 1.03
SHMT1-209ENST00000582653 CHPFQ8IZ52 775 aa21.46■■□□□ 1.03
SHMT1-209ENST00000582653 ARHGAP18Q8N392 663 aa21.46■■□□□ 1.03
SHMT1-209ENST00000582653 KAT5Q92993 513 aa21.46■■□□□ 1.03
SHMT1-209ENST00000582653 ACOX2Q99424 681 aa21.46■■□□□ 1.03
SHMT1-209ENST00000582653 GABRG3Q99928 467 aa21.46■■□□□ 1.03
SHMT1-209ENST00000582653 DCLK3Q9C098 648 aa21.46■■□□□ 1.03
SHMT1-209ENST00000582653 CD248Q9HCU0 757 aa21.46■■□□□ 1.03
SHMT1-209ENST00000582653 TMEM9BQ9NQ34 198 aa21.46■■□□□ 1.03
SHMT1-209ENST00000582653 TMEM74BQ9NUR3 256 aa21.46■■□□□ 1.03
SHMT1-209ENST00000582653 NUP205Q92621 2012 aa21.45■■□□□ 1.02
SHMT1-209ENST00000582653 MYO18AQ92614 2054 aaKnown RBP21.45■■□□□ 1.02
SHMT1-209ENST00000582653 RNF225M0QZC1 329 aaPredicted RBP21.45■■□□□ 1.02
SHMT1-209ENST00000582653 GFRA2O00451 464 aa21.45■■□□□ 1.02
SHMT1-209ENST00000582653 XPO1O14980 1071 aaKnown RBP21.45■■□□□ 1.02
SHMT1-209ENST00000582653 CALCAP01258 141 aa21.45■■□□□ 1.02
SHMT1-209ENST00000582653 VDRP11473 427 aa21.45■■□□□ 1.02
SHMT1-209ENST00000582653 TBXAS1P24557 533 aaPredicted RBP21.45■■□□□ 1.02
SHMT1-209ENST00000582653 DPP6P42658 865 aa21.45■■□□□ 1.02
SHMT1-209ENST00000582653 BCAT1P54687 386 aa21.45■■□□□ 1.02
SHMT1-209ENST00000582653 PM20D1Q6GTS8 502 aa21.45■■□□□ 1.02
SHMT1-209ENST00000582653 TMEM270Q6UE05 265 aa21.45■■□□□ 1.02
SHMT1-209ENST00000582653 SLC36A4Q6YBV0 504 aa21.45■■□□□ 1.02
SHMT1-209ENST00000582653 RSRC2Q7L4I2 434 aaKnown RBP21.45■■□□□ 1.02
SHMT1-209ENST00000582653 BHLHA9Q7RTU4 235 aa21.45■■□□□ 1.02
SHMT1-209ENST00000582653 LMO3Q8TAP4 145 aa21.45■■□□□ 1.02
SHMT1-209ENST00000582653 TFAP2BQ92481 460 aa21.45■■□□□ 1.02
SHMT1-209ENST00000582653 ERLEC1Q96DZ1 483 aa21.45■■□□□ 1.02
SHMT1-209ENST00000582653 NT5C1BQ96P26 610 aa21.45■■□□□ 1.02
SHMT1-209ENST00000582653 MARCH2Q9P0N8 246 aa21.45■■□□□ 1.02
SHMT1-209ENST00000582653 HESX1Q9UBX0 185 aa21.45■■□□□ 1.02
SHMT1-209ENST00000582653 ANGPTL2Q9UKU9 493 aa21.45■■□□□ 1.02
SHMT1-209ENST00000582653 PCDHB4Q9Y5E5 795 aa21.45■■□□□ 1.02
SHMT1-209ENST00000582653 SLC12A8A0AV02 714 aa21.44■■□□□ 1.02
SHMT1-209ENST00000582653 O00370 1275 aa21.44■■□□□ 1.02
SHMT1-209ENST00000582653 CORO1AP31146 461 aaKnown RBP21.44■■□□□ 1.02
SHMT1-209ENST00000582653 ADIGQ0VDE8 80 aa21.44■■□□□ 1.02
SHMT1-209ENST00000582653 BST2Q10589 180 aaKnown RBP21.44■■□□□ 1.02
SHMT1-209ENST00000582653 LMAN2Q12907 356 aa21.44■■□□□ 1.02
SHMT1-209ENST00000582653 TRIM61Q5EBN2 209 aa21.44■■□□□ 1.02
SHMT1-209ENST00000582653 SLC23A3Q6PIS1 610 aa21.44■■□□□ 1.02
SHMT1-209ENST00000582653 DENND1CQ8IV53 801 aa21.44■■□□□ 1.02
SHMT1-209ENST00000582653 PPM1KQ8N3J5 372 aa21.44■■□□□ 1.02
SHMT1-209ENST00000582653 IPO4Q8TEX9 1081 aaKnown RBP21.44■■□□□ 1.02
SHMT1-209ENST00000582653 LRRC4Q9HBW1 653 aa21.44■■□□□ 1.02
SHMT1-209ENST00000582653 PILRBQ9UKJ0 227 aa21.44■■□□□ 1.02
SHMT1-209ENST00000582653 AGO1Q9UL18 857 aaKnown RBP21.44■■□□□ 1.02
SHMT1-209ENST00000582653 SLC27A6Q9Y2P4 619 aa21.44■■□□□ 1.02
SHMT1-209ENST00000582653 BICDL2A1A5D9 508 aa21.43■■□□□ 1.02
SHMT1-209ENST00000582653 PMM2O15305 246 aa21.43■■□□□ 1.02
SHMT1-209ENST00000582653 AP5Z1O43299 807 aa21.43■■□□□ 1.02
SHMT1-209ENST00000582653 ZNF217O75362 1048 aa21.43■■□□□ 1.02
SHMT1-209ENST00000582653 PENKP01210 267 aaPredicted RBP21.43■■□□□ 1.02
SHMT1-209ENST00000582653 SHC2P98077 582 aa21.43■■□□□ 1.02
SHMT1-209ENST00000582653 PEAR1Q5VY43 1037 aaPredicted RBP21.43■■□□□ 1.02
SHMT1-209ENST00000582653 LYSMD4Q5XG99 296 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms