RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 CERKLQ49MI3 558 aaPredicted RBP5.29□□□□□ -1.56
SMCHD1-204ENST00000581226 C4orf46Q504U0 113 aa5.29□□□□□ -1.56
SMCHD1-204ENST00000581226 DPY19L2P1Q6NXN4 242 aa5.29□□□□□ -1.56
SMCHD1-204ENST00000581226 LINC01465Q8N7H1 131 aa5.29□□□□□ -1.56
SMCHD1-204ENST00000581226 POF1BQ8WVV4 589 aa5.29□□□□□ -1.56
SMCHD1-204ENST00000581226 RITA1Q96K30 269 aa5.29□□□□□ -1.56
SMCHD1-204ENST00000581226 ASB2Q96Q27 587 aa5.29□□□□□ -1.56
SMCHD1-204ENST00000581226 EIF3CQ99613 913 aaKnown RBP5.29□□□□□ -1.56
SMCHD1-204ENST00000581226 PRPF18Q99633 342 aaKnown RBP5.29□□□□□ -1.56
SMCHD1-204ENST00000581226 SAP30LQ9HAJ7 183 aa5.29□□□□□ -1.56
SMCHD1-204ENST00000581226 OBP2BQ9NPH6 170 aa5.29□□□□□ -1.56
SMCHD1-204ENST00000581226 VPS45Q9NRW7 570 aa5.29□□□□□ -1.56
SMCHD1-204ENST00000581226 VPS4AQ9UN37 437 aa5.29□□□□□ -1.56
SMCHD1-204ENST00000581226 COMMD10Q9Y6G5 202 aa5.29□□□□□ -1.56
SMCHD1-204ENST00000581226 LOC105378220A0A1B0GUY1 285 aaPredicted RBP5.28□□□□□ -1.56
SMCHD1-204ENST00000581226 AQP12BA6NM10 295 aa5.28□□□□□ -1.56
SMCHD1-204ENST00000581226 CLIC1O00299 241 aa5.28□□□□□ -1.56
SMCHD1-204ENST00000581226 FYB1O15117 783 aa5.28□□□□□ -1.56
SMCHD1-204ENST00000581226 PRAMEF2O60811 474 aa5.28□□□□□ -1.56
SMCHD1-204ENST00000581226 NTSR2O95665 410 aa5.28□□□□□ -1.56
SMCHD1-204ENST00000581226 CHRM5P08912 532 aaPredicted RBP5.28□□□□□ -1.56
SMCHD1-204ENST00000581226 NPPBP16860 134 aa5.28□□□□□ -1.56
SMCHD1-204ENST00000581226 GALNSP34059 522 aa5.28□□□□□ -1.56
SMCHD1-204ENST00000581226 ALDH18A1P54886 795 aaKnown RBP5.28□□□□□ -1.56
SMCHD1-204ENST00000581226 CSHL1Q14406 222 aa5.28□□□□□ -1.56
SMCHD1-204ENST00000581226 SPARCL1Q14515 664 aa5.28□□□□□ -1.56
SMCHD1-204ENST00000581226 KCNB1Q14721 858 aa5.28□□□□□ -1.56
SMCHD1-204ENST00000581226 FAM90A2PQ658T7 463 aa5.28□□□□□ -1.56
SMCHD1-204ENST00000581226 CCDC144NLQ6NUI1 221 aa5.28□□□□□ -1.56
SMCHD1-204ENST00000581226 SYCE2Q6PIF2 218 aa5.28□□□□□ -1.56
SMCHD1-204ENST00000581226 ZNF782Q6ZMW2 699 aaPredicted RBP5.28□□□□□ -1.56
SMCHD1-204ENST00000581226 DCDC5Q6ZRR9 648 aa5.28□□□□□ -1.56
SMCHD1-204ENST00000581226 CLASRPQ8N2M8 674 aaKnown RBP5.28□□□□□ -1.56
SMCHD1-204ENST00000581226 NTN5Q8WTR8 489 aaPredicted RBP5.28□□□□□ -1.56
SMCHD1-204ENST00000581226 OVCA2Q8WZ82 227 aa5.28□□□□□ -1.56
SMCHD1-204ENST00000581226 FZD4Q9ULV1 537 aa5.28□□□□□ -1.56
SMCHD1-204ENST00000581226 FNDC1Q4ZHG4 1894 aaPredicted RBP5.28□□□□□ -1.56
SMCHD1-204ENST00000581226 LGALS16A8MUM7 142 aa5.27□□□□□ -1.57
SMCHD1-204ENST00000581226 H3BNC9 293 aa5.27□□□□□ -1.57
SMCHD1-204ENST00000581226 MASP2O00187 686 aa5.27□□□□□ -1.57
SMCHD1-204ENST00000581226 PCDH17O14917 1159 aa5.27□□□□□ -1.57
SMCHD1-204ENST00000581226 TAF5LO75529 589 aa5.27□□□□□ -1.57
SMCHD1-204ENST00000581226 SKAP2O75563 359 aaPredicted RBP5.27□□□□□ -1.57
SMCHD1-204ENST00000581226 ANXA6P08133 673 aa5.27□□□□□ -1.57
SMCHD1-204ENST00000581226 MMP8P22894 467 aa5.27□□□□□ -1.57
SMCHD1-204ENST00000581226 ICA1Q05084 483 aa5.27□□□□□ -1.57
SMCHD1-204ENST00000581226 SLC10A2Q12908 348 aaPredicted RBP5.27□□□□□ -1.57
SMCHD1-204ENST00000581226 LARS2Q15031 903 aaKnown RBP5.27□□□□□ -1.57
SMCHD1-204ENST00000581226 PUM3Q15397 648 aaKnown RBP5.27□□□□□ -1.57
SMCHD1-204ENST00000581226 PFKFB4Q16877 469 aa5.27□□□□□ -1.57
SMCHD1-204ENST00000581226 C10orf62Q5T681 223 aaPredicted RBP5.27□□□□□ -1.57
SMCHD1-204ENST00000581226 VSTM1Q6UX27 236 aa5.27□□□□□ -1.57
SMCHD1-204ENST00000581226 PIK3AP1Q6ZUJ8 805 aa5.27□□□□□ -1.57
SMCHD1-204ENST00000581226 KRT27Q7Z3Y8 459 aa5.27□□□□□ -1.57
SMCHD1-204ENST00000581226 GATAD2AQ86YP4 633 aa5.27□□□□□ -1.57
SMCHD1-204ENST00000581226 STYXQ8WUJ0 223 aa5.27□□□□□ -1.57
SMCHD1-204ENST00000581226 DPF1Q92782 380 aa5.27□□□□□ -1.57
SMCHD1-204ENST00000581226 PMM1Q92871 262 aa5.27□□□□□ -1.57
SMCHD1-204ENST00000581226 ADGRE3Q9BY15 652 aa5.27□□□□□ -1.57
SMCHD1-204ENST00000581226 FSCN3Q9NQT6 498 aa5.27□□□□□ -1.57
SMCHD1-204ENST00000581226 RXFP3Q9NSD7 469 aa5.27□□□□□ -1.57
SMCHD1-204ENST00000581226 GAR1Q9NY12 217 aaKnown RBP5.27□□□□□ -1.57
SMCHD1-204ENST00000581226 KAT6AQ92794 2004 aa5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 WIPF3A6NGB9 483 aa5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 NPC1O15118 1278 aa5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 DHHO43323 396 aa5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 DNPH1O43598 174 aa5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 ASNA1O43681 348 aa5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 LDHAP00338 332 aaKnown RBP5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 CYP2A6P11509 494 aaPredicted RBP5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 ATF7P17544 494 aaPredicted RBP5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 PDIA3P30101 505 aaKnown RBP5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 IGHMBP2P38935 993 aaKnown RBP5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 JAK3P52333 1124 aa5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 RAE1P78406 368 aaKnown RBP5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 TRIM14Q14142 442 aa5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 PTK2BQ14289 1009 aa5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 GRM4Q14833 912 aa5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 ELF2Q15723 593 aa5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 TRIM71Q2Q1W2 868 aaKnown RBP5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 ZACNQ401N2 412 aa5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 AWAT1Q58HT5 328 aa5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 CC2D1BQ5T0F9 858 aaKnown RBP5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 RINT1Q6NUQ1 792 aa5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 MSANTD2Q6P1R3 559 aa5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 C16orf71Q8IYS4 520 aaPredicted RBP5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 ENAHQ8N8S7 591 aaPredicted RBP5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 ATG16L2Q8NAA4 619 aa5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 FAM71BQ8TC56 605 aa5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 WDR60Q8WVS4 1066 aa5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 KAZALD1Q96I82 304 aa5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 FBXO28Q9NVF7 368 aa5.26□□□□□ -1.57
SMCHD1-204ENST00000581226 TMEM232C9JQI7 657 aa5.25□□□□□ -1.57
SMCHD1-204ENST00000581226 CTIFO43310 598 aaKnown RBP5.25□□□□□ -1.57
SMCHD1-204ENST00000581226 TNFRSF6BO95407 300 aa5.25□□□□□ -1.57
SMCHD1-204ENST00000581226 MBPP02686 304 aaPredicted RBP5.25□□□□□ -1.57
SMCHD1-204ENST00000581226 ITGA5P08648 1049 aa5.25□□□□□ -1.57
SMCHD1-204ENST00000581226 CYP2D6P10635 497 aa5.25□□□□□ -1.57
SMCHD1-204ENST00000581226 ALADP13716 330 aa5.25□□□□□ -1.57
SMCHD1-204ENST00000581226 AKT1P31749 480 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms