RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 PHC3Q8NDX5 983 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 LPPQ93052 612 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 PPP1R14AQ96A00 147 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 SPDL1Q96EA4 605 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 TMEM176AQ96HP8 235 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 PANX3Q96QZ0 392 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 BBS4Q96RK4 519 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 SLC38A3Q99624 504 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 RANBP17Q9H2T7 1088 aaKnown RBP3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 NSUN3Q9H649 340 aaKnown RBP3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 ZFYVE1Q9HBF4 777 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 EML4Q9HC35 981 aaKnown RBP3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 GPRC5CQ9NQ84 441 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 SLC2A4RGQ9NR83 387 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 THEGQ9P2T0 379 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 APEX2Q9UBZ4 518 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 CD207Q9UJ71 328 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 PSME2Q9UL46 239 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 SLC27A5Q9Y2P5 690 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 Q9Y3F1 56 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 PP2D1A8MPX8 630 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 KLHL41O60662 606 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 CLASP2O75122 1294 aaKnown RBP3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 VPS4BO75351 444 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 E2F6O75461 281 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 BAIAP3O94812 1187 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 GUCA1CO95843 209 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 KRT14P02533 472 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 RARGP13631 454 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 COX7A2P14406 83 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 UQCRBP14927 111 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 ZNF7P17097 686 aaPredicted RBP3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 AGXTP21549 392 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 HNRNPH1P31943 449 aaKnown RBP3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 SOAT1P35610 550 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 TUBP50607 506 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 CLCN6P51797 869 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 ZNF135P52742 658 aaPredicted RBP3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 SEC13P55735 322 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 ABCE1P61221 599 aaKnown RBP3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 YWHAZP63104 245 aaKnown RBP3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 BNC1Q01954 994 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 MORF4L2Q15014 288 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 PDGFRLQ15198 375 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 ZC2HC1CQ53FD0 456 aaPredicted RBP3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 TTI2Q6NXR4 508 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 KCNT2Q6UVM3 1135 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 NT5DC3Q86UY8 548 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 PHYKPLQ8IUZ5 450 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 BTN2A2Q8WVV5 523 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 BSNDQ8WZ55 320 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 EDEM1Q92611 657 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 OTULINQ96BN8 352 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 PLEKHA8Q96JA3 519 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 WNT8AQ9H1J5 351 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 DPEP2Q9H4A9 486 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 ATP13A3Q9H7F0 1226 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 SAYSD1Q9NPB0 183 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 SAMSN1Q9NSI8 373 aaKnown RBP3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 UVRAGQ9P2Y5 699 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 CEP152O94986 1710 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 NPHP3-ACAD11A0A0J9YXS1 232 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 GSAPA4D1B5 854 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 A6NCN8 305 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 GRXCR2A6NFK2 248 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 ISM1B1AKI9 464 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 F8W810 466 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 SYN3O14994 580 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 CYP7B1O75881 506 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 CATP04040 527 aaKnown RBP3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 EIF2S1P05198 315 aaKnown RBP3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 SLC35G4P0C7Q5 338 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 YBX3P16989 372 aaKnown RBP eCLIP3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 HOXB8P17481 243 aaPredicted RBP3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 BRD2P25440 801 aaKnown RBP3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 CSTF2P33240 577 aaKnown RBP eCLIP3.02□□□□□ -1.932e-8■■■■■ 34.9
SMCHD1-203ENST00000577880 FXR2P51116 673 aaKnown RBP eCLIP3.02□□□□□ -1.931e-6■■■■□ 22.1
SMCHD1-203ENST00000577880 SESN3P58005 492 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 DUSP4Q13115 394 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 GNA13Q14344 377 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 NDUFA9Q16795 377 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 Q4G0T1 1027 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 C2orf27AQ580R0 203 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 ANKRD20A8PQ5CZ79 823 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 FSCBQ5H9T9 825 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 ALS2CLQ60I27 953 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 OLFML2BQ68BL8 750 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 VSTM1Q6UX27 236 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 CYP2U1Q7Z449 544 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 ZFPM1Q8IX07 1006 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 FAM9CQ8IZT9 166 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 IL22RA1Q8N6P7 574 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 AVL9Q8NBF6 648 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 C18orf25Q96B23 403 aaPredicted RBP3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 PHF21AQ96BD5 680 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 SIPA1Q96FS4 1042 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 ELMO2Q96JJ3 720 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 MCEEQ96PE7 176 aa3.02□□□□□ -1.93
SMCHD1-203ENST00000577880 TRIM15Q9C019 465 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms