RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 MIS12Q9H081 205 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 SYNCQ9H7C4 482 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 ACP6Q9NPH0 428 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 POLR3BQ9NW08 1133 aaPredicted RBP10.67□□□□□ -0.7
SS18-207ENST00000577636 ARGLU1Q9NWB6 273 aaPredicted RBP10.67□□□□□ -0.7
SS18-207ENST00000577636 TAS2R14Q9NYV8 317 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 ADAM22Q9P0K1 906 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 CNOT8Q9UFF9 292 aaKnown RBP10.67□□□□□ -0.7
SS18-207ENST00000577636 TUBGCP4Q9UGJ1 667 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 SALL4Q9UJQ4 1053 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 STRIP2Q9ULQ0 834 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 SLC8A2Q9UPR5 921 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 SDK1Q7Z5N4 2213 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 CACNA1GO43497 2377 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 RALGAPA1Q6GYQ0 2036 aa10.67□□□□□ -0.7
SS18-207ENST00000577636 TICRRQ7Z2Z1 1910 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 CES2O00748 559 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 HUS1O60921 280 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 CILPO75339 1184 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 TADA3O75528 432 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 MTA2O94776 668 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 KCNK5O95279 499 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 CYP1A1P04798 512 aaPredicted RBP10.66□□□□□ -0.7
SS18-207ENST00000577636 TUBBP07437 444 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 ZNF806P0C7X5 589 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 VDRP11473 427 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 UNGP13051 313 aaPredicted RBP10.66□□□□□ -0.7
SS18-207ENST00000577636 GABRR2P28476 465 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 TAF6P49848 677 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 MLLT6P55198 1093 aaPredicted RBP10.66□□□□□ -0.7
SS18-207ENST00000577636 CYP4F8P98187 520 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 PLD1Q13393 1074 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 ZBTB6Q15916 424 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 ARHGAP15Q53QZ3 475 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 C9orf57Q5W0N0 161 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 PSAPL1Q6NUJ1 521 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 PKN3Q6P5Z2 889 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 DNAJB7Q7Z6W7 309 aaPredicted RBP10.66□□□□□ -0.7
SS18-207ENST00000577636 PHF13Q86YI8 300 aaPredicted RBP10.66□□□□□ -0.7
SS18-207ENST00000577636 TMC8Q8IU68 726 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 PASD1Q8IV76 773 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 MCOLN2Q8IZK6 566 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 ATAD1Q8NBU5 361 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 ZNF564Q8TBZ8 553 aaPredicted RBP10.66□□□□□ -0.7
SS18-207ENST00000577636 BPIFB1Q8TDL5 484 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 GAB3Q8WWW8 586 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 CPA5Q8WXQ8 436 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 CYFIP2Q96F07 1278 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 HEXIM2Q96MH2 286 aaKnown RBP10.66□□□□□ -0.7
SS18-207ENST00000577636 TLR10Q9BXR5 811 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 LRRC3Q9BY71 257 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 SMG9Q9H0W8 520 aaKnown RBP10.66□□□□□ -0.7
SS18-207ENST00000577636 CRISPLD1Q9H336 500 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 SNX25Q9H3E2 840 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 SMYD3Q9H7B4 428 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 PARVAQ9NVD7 372 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 MAFFQ9ULX9 164 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 PCDHGC3Q9UN70 934 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 SNX9Q9Y5X1 595 aa10.66□□□□□ -0.7
SS18-207ENST00000577636 TMEM110-MUSTN1A8MSY1 372 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 KPNA7A9QM74 516 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 KCNK3O14649 394 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 TM4SF5O14894 197 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 MEFVO15553 781 aaPredicted RBP10.65□□□□□ -0.7
SS18-207ENST00000577636 SPOPO43791 374 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 BUB1BO60566 1050 aaPredicted RBP10.65□□□□□ -0.7
SS18-207ENST00000577636 SRGAP2O75044 1071 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 PAPSS2O95340 614 aaPredicted RBP10.65□□□□□ -0.7
SS18-207ENST00000577636 VNN2O95498 520 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 PAX3P23760 479 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 MCM3P25205 808 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 BRD2P25440 801 aaKnown RBP10.65□□□□□ -0.7
SS18-207ENST00000577636 RAP1GAPP47736 663 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 DNA2P51530 1060 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 GUCY2FP51841 1108 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 LIMK1P53667 647 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 NOMO3P69849 1222 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 FCHO2Q0JRZ9 810 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 INCA1Q0VD86 236 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 COL9A2Q14055 689 aaPredicted RBP10.65□□□□□ -0.7
SS18-207ENST00000577636 TAF12Q16514 161 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 RNF43Q68DV7 783 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 GAREM2Q75VX8 874 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 SLFN11Q7Z7L1 901 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 UNC93AQ86WB7 457 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 ERICH1Q86X53 443 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 DNAAF5Q86Y56 855 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 TTC9BQ8N6N2 239 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 LRRC57Q8N9N7 239 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 OLIG1Q8TAK6 271 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 CXorf38Q8TB03 319 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 IPO4Q8TEX9 1081 aaKnown RBP10.65□□□□□ -0.7
SS18-207ENST00000577636 ARHGEF26Q96DR7 871 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 TMEM209Q96SK2 561 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 NAP1L3Q99457 506 aaPredicted RBP10.65□□□□□ -0.7
SS18-207ENST00000577636 LHX5Q9H2C1 402 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 OSGEPQ9NPF4 335 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 GKN1Q9NS71 199 aa10.65□□□□□ -0.7
SS18-207ENST00000577636 THG1LQ9NWX6 298 aaKnown RBP10.65□□□□□ -0.7
SS18-207ENST00000577636 HESX1Q9UBX0 185 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms