RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 ZNF419Q96HQ0 510 aaPredicted RBP22.16■■□□□ 1.14
VPS53-216ENST00000574029 GTPBP2Q9BX10 602 aaKnown RBP22.16■■□□□ 1.14
VPS53-216ENST00000574029 CACNA2D2Q9NY47 1150 aa22.16■■□□□ 1.14
VPS53-216ENST00000574029 PLK2Q9NYY3 685 aa22.16■■□□□ 1.14
VPS53-216ENST00000574029 ZNF510Q9Y2H8 683 aa22.16■■□□□ 1.14
VPS53-216ENST00000574029 SLC27A6Q9Y2P4 619 aa22.16■■□□□ 1.14
VPS53-216ENST00000574029 FRYQ5TBA9 3013 aa22.15■■□□□ 1.14
VPS53-216ENST00000574029 FAM237AA0A1B0GTK4 181 aa22.15■■□□□ 1.14
VPS53-216ENST00000574029 A0A1W2PQD8 194 aa22.15■■□□□ 1.14
VPS53-216ENST00000574029 TMEM8BA6NDV4 472 aa22.15■■□□□ 1.14
VPS53-216ENST00000574029 PENKP01210 267 aaPredicted RBP22.15■■□□□ 1.14
VPS53-216ENST00000574029 KLKB1P03952 638 aa22.15■■□□□ 1.14
VPS53-216ENST00000574029 PRR29P0C7W0 189 aa22.15■■□□□ 1.14
VPS53-216ENST00000574029 KRT13P13646 458 aa22.15■■□□□ 1.14
VPS53-216ENST00000574029 FAM186BQ8IYM0 893 aa22.15■■□□□ 1.14
VPS53-216ENST00000574029 TRIML1Q8N9V2 468 aa22.15■■□□□ 1.14
VPS53-216ENST00000574029 ERLEC1Q96DZ1 483 aa22.15■■□□□ 1.14
VPS53-216ENST00000574029 HSPA12BQ96MM6 686 aa22.15■■□□□ 1.14
VPS53-216ENST00000574029 CDK5RAP1Q96SZ6 601 aaKnown RBP22.15■■□□□ 1.14
VPS53-216ENST00000574029 DNAI2Q9GZS0 605 aa22.15■■□□□ 1.14
VPS53-216ENST00000574029 SLC6A17Q9H1V8 727 aa22.15■■□□□ 1.14
VPS53-216ENST00000574029 TMEM8AQ9HCN3 771 aa22.15■■□□□ 1.14
VPS53-216ENST00000574029 CD93Q9NPY3 652 aa22.15■■□□□ 1.14
VPS53-216ENST00000574029 WASH3PC4AMC7 463 aa22.14■■□□□ 1.13
VPS53-216ENST00000574029 ARHGAP33O14559 1287 aa22.14■■□□□ 1.13
VPS53-216ENST00000574029 OPHN1O60890 802 aa22.14■■□□□ 1.13
VPS53-216ENST00000574029 RALAP11233 206 aa22.14■■□□□ 1.13
VPS53-216ENST00000574029 PSMC2P35998 433 aaKnown RBP22.14■■□□□ 1.13
VPS53-216ENST00000574029 DPYDQ12882 1025 aa22.14■■□□□ 1.13
VPS53-216ENST00000574029 FYB2Q5VWT5 728 aa22.14■■□□□ 1.13
VPS53-216ENST00000574029 MINDY1Q8N5J2 469 aa22.14■■□□□ 1.13
VPS53-216ENST00000574029 CCDC150Q8NCX0 1101 aa22.14■■□□□ 1.13
VPS53-216ENST00000574029 BHMTQ93088 406 aa22.14■■□□□ 1.13
VPS53-216ENST00000574029 CCDC47Q96A33 483 aaKnown RBP22.14■■□□□ 1.13
VPS53-216ENST00000574029 FAXDC2Q96IV6 333 aa22.14■■□□□ 1.13
VPS53-216ENST00000574029 MAPK8IP1Q9UQF2 711 aa22.14■■□□□ 1.13
VPS53-216ENST00000574029 NEUROG3Q9Y4Z2 214 aa22.14■■□□□ 1.13
VPS53-216ENST00000574029 STON1Q9Y6Q2 735 aa22.14■■□□□ 1.13
VPS53-216ENST00000574029 CFAP47Q6ZTR5 3102 aa22.13■■□□□ 1.13
VPS53-216ENST00000574029 GON4LQ3T8J9 2241 aa22.13■■□□□ 1.13
VPS53-216ENST00000574029 SPAARA0A1B0GVQ0 90 aa22.13■■□□□ 1.13
VPS53-216ENST00000574029 RPL13P26373 211 aaKnown RBP22.13■■□□□ 1.13
VPS53-216ENST00000574029 CHKAP35790 457 aa22.13■■□□□ 1.13
VPS53-216ENST00000574029 SYKP43405 635 aa22.13■■□□□ 1.13
VPS53-216ENST00000574029 MFAP3P55082 362 aa22.13■■□□□ 1.13
VPS53-216ENST00000574029 COG7P83436 770 aa22.13■■□□□ 1.13
VPS53-216ENST00000574029 METTL3Q86U44 580 aaKnown RBP22.13■■□□□ 1.13
VPS53-216ENST00000574029 GUF1Q8N442 669 aaKnown RBP22.13■■□□□ 1.13
VPS53-216ENST00000574029 SPATA32Q96LK8 384 aa22.13■■□□□ 1.13
VPS53-216ENST00000574029 UBXN6Q9BZV1 441 aa22.13■■□□□ 1.13
VPS53-216ENST00000574029 MMRN2Q9H8L6 949 aa22.13■■□□□ 1.13
VPS53-216ENST00000574029 DNAAF2Q9NVR5 837 aaKnown RBP22.13■■□□□ 1.13
VPS53-216ENST00000574029 RASAL2Q9UJF2 1139 aa22.13■■□□□ 1.13
VPS53-216ENST00000574029 CEP295Q9C0D2 2601 aa22.13■■□□□ 1.13
VPS53-216ENST00000574029 PCNX2A6NKB5 2137 aa22.13■■□□□ 1.13
VPS53-216ENST00000574029 NPC1O15118 1278 aa22.12■■□□□ 1.13
VPS53-216ENST00000574029 HYAL3O43820 417 aaPredicted RBP22.12■■□□□ 1.13
VPS53-216ENST00000574029 NDUFS2O75306 463 aa22.12■■□□□ 1.13
VPS53-216ENST00000574029 SYPP08247 313 aa22.12■■□□□ 1.13
VPS53-216ENST00000574029 GTF2H1P32780 548 aa22.12■■□□□ 1.13
VPS53-216ENST00000574029 NDUFA8P51970 172 aa22.12■■□□□ 1.13
VPS53-216ENST00000574029 ZNF132P52740 706 aa22.12■■□□□ 1.13
VPS53-216ENST00000574029 SIM1P81133 766 aaPredicted RBP22.12■■□□□ 1.13
VPS53-216ENST00000574029 ADAM9Q13443 819 aa22.12■■□□□ 1.13
VPS53-216ENST00000574029 ENPP2Q13822 863 aa22.12■■□□□ 1.13
VPS53-216ENST00000574029 ZCWPW2Q504Y3 356 aa22.12■■□□□ 1.13
VPS53-216ENST00000574029 ZNF394Q53GI3 561 aa22.12■■□□□ 1.13
VPS53-216ENST00000574029 KRT39Q6A163 491 aa22.12■■□□□ 1.13
VPS53-216ENST00000574029 TTC39CQ8N584 583 aa22.12■■□□□ 1.13
VPS53-216ENST00000574029 SPRYD3Q8NCJ5 442 aa22.12■■□□□ 1.13
VPS53-216ENST00000574029 OR2I1PQ8NGU4 316 aa22.12■■□□□ 1.13
VPS53-216ENST00000574029 FOXJ1Q92949 421 aa22.12■■□□□ 1.13
VPS53-216ENST00000574029 HEXIM2Q96MH2 286 aaKnown RBP22.12■■□□□ 1.13
VPS53-216ENST00000574029 DCLK3Q9C098 648 aa22.12■■□□□ 1.13
VPS53-216ENST00000574029 FAM124BQ9H5Z6 455 aaPredicted RBP22.12■■□□□ 1.13
VPS53-216ENST00000574029 THAP10Q9P2Z0 257 aaPredicted RBP22.12■■□□□ 1.13
VPS53-216ENST00000574029 CD59P13987 128 aa22.11■■□□□ 1.13
VPS53-216ENST00000574029 CORO1AP31146 461 aaKnown RBP22.11■■□□□ 1.13
VPS53-216ENST00000574029 EFEMP1Q12805 493 aa22.11■■□□□ 1.13
VPS53-216ENST00000574029 GEN1Q17RS7 908 aa22.11■■□□□ 1.13
VPS53-216ENST00000574029 FUT11Q495W5 492 aa22.11■■□□□ 1.13
VPS53-216ENST00000574029 RAB41Q5JT25 222 aa22.11■■□□□ 1.13
VPS53-216ENST00000574029 SYCP2LQ5T4T6 812 aa22.11■■□□□ 1.13
VPS53-216ENST00000574029 KIAA1324Q6UXG2 1013 aaKnown RBP22.11■■□□□ 1.13
VPS53-216ENST00000574029 SEMA4DQ92854 862 aa22.11■■□□□ 1.13
VPS53-216ENST00000574029 SUSD2Q9UGT4 822 aa22.11■■□□□ 1.13
VPS53-216ENST00000574029 AGO1Q9UL18 857 aaKnown RBP22.11■■□□□ 1.13
VPS53-216ENST00000574029 GJB3O75712 270 aa22.1■■□□□ 1.13
VPS53-216ENST00000574029 CD6P30203 668 aa22.1■■□□□ 1.13
VPS53-216ENST00000574029 IL12RB1P42701 662 aa22.1■■□□□ 1.13
VPS53-216ENST00000574029 RAD23BP54727 409 aa22.1■■□□□ 1.13
VPS53-216ENST00000574029 FAM193AP78312 1265 aa22.1■■□□□ 1.13
VPS53-216ENST00000574029 KRT85P78386 507 aa22.1■■□□□ 1.13
VPS53-216ENST00000574029 STARD3Q14849 445 aa22.1■■□□□ 1.13
VPS53-216ENST00000574029 ARHGAP17Q68EM7 881 aa22.1■■□□□ 1.13
VPS53-216ENST00000574029 RGL4Q8IZJ4 473 aa22.1■■□□□ 1.13
VPS53-216ENST00000574029 ARHGAP18Q8N392 663 aa22.1■■□□□ 1.13
VPS53-216ENST00000574029 CPXM2Q8N436 756 aa22.1■■□□□ 1.13
VPS53-216ENST00000574029 SLC4A11Q8NBS3 891 aa22.1■■□□□ 1.13
VPS53-216ENST00000574029 TMEM176AQ96HP8 235 aa22.1■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms