RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 JADE3Q92613 823 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 NLRP4Q96MN2 994 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 PIDD1Q9HB75 910 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 TXNDC16Q9P2K2 825 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 KIAA1257Q9ULG3 409 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 ADAMTS5Q9UNA0 930 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 PCDHA11Q9Y5I1 949 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 PSME4Q14997 1843 aa11.13□□□□□ -0.63
CCDC40-207ENST00000572253 NOP56O00567 594 aaKnown RBP11.12□□□□□ -0.63
CCDC40-207ENST00000572253 TOMM70O94826 608 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 TPSB2P20231 275 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 CRABP2P29373 138 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 UBAP2LQ14157 1087 aaKnown RBP11.12□□□□□ -0.63
CCDC40-207ENST00000572253 STILQ15468 1287 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 TPSAB1Q15661 275 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 ZCCHC23Q6ZST2 131 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 ADGRG6Q86SQ4 1221 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 C12orf42Q96LP6 360 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 WRNIP1Q96S55 665 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 FERMT1Q9BQL6 677 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 ZNF395Q9H8N7 513 aaPredicted RBP11.12□□□□□ -0.63
CCDC40-207ENST00000572253 PCDH18Q9HCL0 1135 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 DCAF8L1A6NGE4 600 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 A6NJR5 290 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 UGT1A9O60656 530 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 GRAP2O75791 330 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 C6orf222P0C671 652 aaPredicted RBP11.12□□□□□ -0.63
CCDC40-207ENST00000572253 PDE1BQ01064 536 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 ASPHQ12797 758 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 TIFABQ6ZNK6 161 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 SLC25A41Q8N5S1 370 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 FBXO27Q8NI29 283 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 IFT43Q96FT9 208 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 PCYT2Q99447 389 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 UGT1A7Q9HAW7 530 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 UGT1A10Q9HAW8 530 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 UGT1A8Q9HAW9 530 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 S100A14Q9HCY8 104 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 KAT6AQ92794 2004 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 SDR42E2A6NKP2 422 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 MEI4A8MW99 385 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 PIK3R2O00459 728 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 OPHN1O60890 802 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 MYL4P12829 197 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 PTPRAP18433 802 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 EPHB1P54762 984 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 TNFAIP2Q03169 654 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 CDC16Q13042 620 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 MED21Q13503 144 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 STXBP5Q5T5C0 1151 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 MAP3K21Q5TCX8 1036 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 SH3PXD2AQ5TCZ1 1133 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 CATSPERGQ6ZRH7 1159 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 FAM183BPQ6ZVS7 135 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 DHDDSQ86SQ9 333 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 SLC26A7Q8TE54 656 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 FAM172AQ8WUF8 416 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 CMTM5Q96DZ9 223 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 ZNF670Q9BS34 389 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 SMYD2Q9NRG4 433 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 DOCK5Q9H7D0 1870 aa11.12□□□□□ -0.63
CCDC40-207ENST00000572253 STK10O94804 968 aaKnown RBP11.11□□□□□ -0.63
CCDC40-207ENST00000572253 SERPINE1P05121 402 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 GRK2P25098 689 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 SLC1A6P48664 564 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 CUL3Q13618 768 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 MTHFD1LQ6UB35 978 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 METTL7BQ6UX53 244 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 C1orf127Q8N9H9 656 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 SREK1Q8WXA9 508 aaKnown RBP11.11□□□□□ -0.63
CCDC40-207ENST00000572253 TWNKQ96RR1 684 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 ETAA1Q9NY74 926 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 DCDC2Q9UHG0 476 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 MAP3K6O95382 1288 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 C1QAP02745 245 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 NFICP08651 508 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 SERPINB6P35237 376 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 GARSP41250 739 aaKnown RBP11.11□□□□□ -0.63
CCDC40-207ENST00000572253 RPL10AP62906 217 aaKnown RBP11.11□□□□□ -0.63
CCDC40-207ENST00000572253 XIAPP98170 497 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 N4BP2L1Q5TBK1 243 aaPredicted RBP11.11□□□□□ -0.63
CCDC40-207ENST00000572253 EEF1DP3Q658K8 133 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 HEATR6Q6AI08 1181 aaKnown RBP11.11□□□□□ -0.63
CCDC40-207ENST00000572253 TRMT10BQ6PF06 316 aaKnown RBP11.11□□□□□ -0.63
CCDC40-207ENST00000572253 CDR2LQ86X02 465 aaPredicted RBP11.11□□□□□ -0.63
CCDC40-207ENST00000572253 CCNJLQ8IV13 435 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 OR6Y1Q8NGX8 325 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 MPHOSPH6Q99547 160 aaKnown RBP11.11□□□□□ -0.63
CCDC40-207ENST00000572253 EBF4Q9BQW3 602 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 CDT1Q9H211 546 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 SIX4Q9UIU6 781 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 ITGA11Q9UKX5 1188 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 PPM1HQ9ULR3 514 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 BARX2Q9UMQ3 279 aaPredicted RBP11.11□□□□□ -0.63
CCDC40-207ENST00000572253 RAB27AP51159 221 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 SLC25A3Q00325 362 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 FSCBQ5H9T9 825 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 NBPF12Q5TAG4 269 aaPredicted RBP11.11□□□□□ -0.63
CCDC40-207ENST00000572253 SLC9A4Q6AI14 798 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 ACAD11Q709F0 780 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms