RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 KRT19P08727 400 aa19.12■□□□□ 0.65
CLK3-227ENST00000570296 WARSP23381 471 aaKnown RBP19.12■□□□□ 0.65
CLK3-227ENST00000570296 ACSL1P33121 698 aa19.12■□□□□ 0.65
CLK3-227ENST00000570296 WNT7BP56706 349 aa19.12■□□□□ 0.65
CLK3-227ENST00000570296 POSTNQ15063 836 aa19.12■□□□□ 0.65
CLK3-227ENST00000570296 MDH1BQ5I0G3 518 aa19.12■□□□□ 0.65
CLK3-227ENST00000570296 DTHD1Q6ZMT9 781 aa19.12■□□□□ 0.65
CLK3-227ENST00000570296 ZNF574Q6ZN55 896 aaPredicted RBP19.12■□□□□ 0.65
CLK3-227ENST00000570296 CACUL1Q86Y37 369 aa19.12■□□□□ 0.65
CLK3-227ENST00000570296 BRSK2Q8IWQ3 736 aa19.12■□□□□ 0.65
CLK3-227ENST00000570296 KCNE4Q8WWG9 221 aa19.12■□□□□ 0.65
CLK3-227ENST00000570296 POMGNT1Q8WZA1 660 aa19.12■□□□□ 0.65
CLK3-227ENST00000570296 FIZ1Q96SL8 496 aa19.12■□□□□ 0.65
CLK3-227ENST00000570296 TRIM4Q9C037 500 aa19.12■□□□□ 0.65
CLK3-227ENST00000570296 NACA2Q9H009 215 aa19.12■□□□□ 0.65
CLK3-227ENST00000570296 ANKMY1Q9P2S6 941 aa19.12■□□□□ 0.65
CLK3-227ENST00000570296 SIX4Q9UIU6 781 aa19.12■□□□□ 0.65
CLK3-227ENST00000570296 DXOO77932 396 aaKnown RBP19.11■□□□□ 0.65
CLK3-227ENST00000570296 SEMA4FO95754 770 aa19.11■□□□□ 0.65
CLK3-227ENST00000570296 PDGFRBP09619 1106 aa19.11■□□□□ 0.65
CLK3-227ENST00000570296 CACNA2D1P54289 1103 aa19.11■□□□□ 0.65
CLK3-227ENST00000570296 BCAT1P54687 386 aa19.11■□□□□ 0.65
CLK3-227ENST00000570296 ME3Q16798 604 aa19.11■□□□□ 0.65
CLK3-227ENST00000570296 SCARA3Q6AZY7 606 aa19.11■□□□□ 0.65
CLK3-227ENST00000570296 HS2ST1Q7LGA3 356 aa19.11■□□□□ 0.65
CLK3-227ENST00000570296 LSMEM2Q8N112 164 aa19.11■□□□□ 0.65
CLK3-227ENST00000570296 EID2Q8N6I1 236 aa19.11■□□□□ 0.65
CLK3-227ENST00000570296 TMEM30AQ9NV96 361 aa19.11■□□□□ 0.65
CLK3-227ENST00000570296 CHORDC1Q9UHD1 332 aaPredicted RBP19.11■□□□□ 0.65
CLK3-227ENST00000570296 ADAMTS1Q9UHI8 967 aa19.11■□□□□ 0.65
CLK3-227ENST00000570296 LSM7Q9UK45 103 aaKnown RBP19.11■□□□□ 0.65
CLK3-227ENST00000570296 PLXNA2O75051 1894 aa19.11■□□□□ 0.65
CLK3-227ENST00000570296 ANKRD17O75179 2603 aaKnown RBP19.1■□□□□ 0.65
CLK3-227ENST00000570296 KLK10O43240 276 aa19.1■□□□□ 0.65
CLK3-227ENST00000570296 ZDHHC11BP0C7U3 371 aa19.1■□□□□ 0.65
CLK3-227ENST00000570296 C7P10643 843 aa19.1■□□□□ 0.65
CLK3-227ENST00000570296 GP1BBP13224 206 aa19.1■□□□□ 0.65
CLK3-227ENST00000570296 ERVPABLB-1P60509 514 aa19.1■□□□□ 0.65
CLK3-227ENST00000570296 RACK1P63244 317 aaKnown RBP19.1■□□□□ 0.65
CLK3-227ENST00000570296 INSM1Q01101 510 aaPredicted RBP19.1■□□□□ 0.65
CLK3-227ENST00000570296 OR2T3Q8NH03 318 aa19.1■□□□□ 0.65
CLK3-227ENST00000570296 SKA1Q96BD8 255 aa19.1■□□□□ 0.65
CLK3-227ENST00000570296 CDK5RAP3Q96JB5 506 aa19.1■□□□□ 0.65
CLK3-227ENST00000570296 ORAI3Q9BRQ5 295 aa19.1■□□□□ 0.65
CLK3-227ENST00000570296 LHX5Q9H2C1 402 aa19.1■□□□□ 0.65
CLK3-227ENST00000570296 ST6GALNAC4Q9H4F1 302 aa19.1■□□□□ 0.65
CLK3-227ENST00000570296 SSUH2Q9Y2M2 353 aa19.1■□□□□ 0.65
CLK3-227ENST00000570296 R3HCC1Q9Y3T6 440 aaKnown RBP19.1■□□□□ 0.65
CLK3-227ENST00000570296 CREBBPQ92793 2442 aa19.1■□□□□ 0.65
CLK3-227ENST00000570296 FSBPO95073 299 aa19.09■□□□□ 0.65
CLK3-227ENST00000570296 CKMT2P17540 419 aa19.09■□□□□ 0.65
CLK3-227ENST00000570296 GRIN1Q05586 938 aa19.09■□□□□ 0.65
CLK3-227ENST00000570296 GOLGA8FQ08AF8 430 aa19.09■□□□□ 0.65
CLK3-227ENST00000570296 GOLGA8DPQ0D2H9 430 aa19.09■□□□□ 0.65
CLK3-227ENST00000570296 ZNF234Q14588 700 aa19.09■□□□□ 0.65
CLK3-227ENST00000570296 SHBQ15464 509 aa19.09■□□□□ 0.65
CLK3-227ENST00000570296 TMEM119Q4V9L6 283 aa19.09■□□□□ 0.65
CLK3-227ENST00000570296 GPBP1Q86WP2 473 aa19.09■□□□□ 0.65
CLK3-227ENST00000570296 C8orf76Q96K31 380 aa19.09■□□□□ 0.65
CLK3-227ENST00000570296 PLIN2Q99541 437 aa19.09■□□□□ 0.65
CLK3-227ENST00000570296 FAM213AQ9BRX8 229 aa19.09■□□□□ 0.65
CLK3-227ENST00000570296 BTBD1Q9H0C5 482 aa19.09■□□□□ 0.65
CLK3-227ENST00000570296 BSNQ9UPA5 3926 aa19.08■□□□□ 0.65
CLK3-227ENST00000570296 EPHX1P07099 455 aa19.08■□□□□ 0.64
CLK3-227ENST00000570296 KRT10P13645 584 aa19.08■□□□□ 0.64
CLK3-227ENST00000570296 PRKCHP24723 683 aa19.08■□□□□ 0.64
CLK3-227ENST00000570296 MFAP3P55082 362 aa19.08■□□□□ 0.64
CLK3-227ENST00000570296 NFATC3Q12968 1075 aa19.08■□□□□ 0.64
CLK3-227ENST00000570296 GNL2Q13823 731 aaKnown RBP19.08■□□□□ 0.64
CLK3-227ENST00000570296 HPDLQ96IR7 371 aa19.08■□□□□ 0.64
CLK3-227ENST00000570296 KLF16Q9BXK1 252 aaPredicted RBP19.08■□□□□ 0.64
CLK3-227ENST00000570296 ZNF518BQ9C0D4 1074 aa19.08■□□□□ 0.64
CLK3-227ENST00000570296 MTMR12Q9C0I1 747 aa19.08■□□□□ 0.64
CLK3-227ENST00000570296 RBAKQ9NYW8 714 aaPredicted RBP19.08■□□□□ 0.64
CLK3-227ENST00000570296 IL37Q9NZH6 218 aa19.08■□□□□ 0.64
CLK3-227ENST00000570296 FAM92AA1XBS5 289 aa19.07■□□□□ 0.64
CLK3-227ENST00000570296 K7ENP7 123 aa19.07■□□□□ 0.64
CLK3-227ENST00000570296 TULP1O00294 542 aaPredicted RBP19.07■□□□□ 0.64
CLK3-227ENST00000570296 TLR5O60602 858 aa19.07■□□□□ 0.64
CLK3-227ENST00000570296 MT-CO3P00414 261 aa19.07■□□□□ 0.64
CLK3-227ENST00000570296 TMEM191BP0C7N4 346 aa19.07■□□□□ 0.64
CLK3-227ENST00000570296 EPHA8P29322 1005 aaPredicted RBP19.07■□□□□ 0.64
CLK3-227ENST00000570296 ARRB1P49407 418 aaPredicted RBP19.07■□□□□ 0.64
CLK3-227ENST00000570296 E2F1Q01094 437 aa19.07■□□□□ 0.64
CLK3-227ENST00000570296 EIF4HQ15056 248 aaKnown RBP19.07■□□□□ 0.64
CLK3-227ENST00000570296 GEN1Q17RS7 908 aa19.07■□□□□ 0.64
CLK3-227ENST00000570296 PRAMEF14Q5SWL7 426 aa19.07■□□□□ 0.64
CLK3-227ENST00000570296 INO80CQ6PI98 192 aaPredicted RBP19.07■□□□□ 0.64
CLK3-227ENST00000570296 KDM7AQ6ZMT4 941 aa19.07■□□□□ 0.64
CLK3-227ENST00000570296 ATG14Q6ZNE5 492 aa19.07■□□□□ 0.64
CLK3-227ENST00000570296 SCAMP5Q8TAC9 235 aa19.07■□□□□ 0.64
CLK3-227ENST00000570296 BHMTQ93088 406 aa19.07■□□□□ 0.64
CLK3-227ENST00000570296 FAM84AQ96KN4 292 aa19.07■□□□□ 0.64
CLK3-227ENST00000570296 SGK2Q9HBY8 427 aa19.07■□□□□ 0.64
CLK3-227ENST00000570296 COMMD8Q9NX08 183 aa19.07■□□□□ 0.64
CLK3-227ENST00000570296 ELOVL2Q9NXB9 296 aa19.07■□□□□ 0.64
CLK3-227ENST00000570296 PLK2Q9NYY3 685 aa19.07■□□□□ 0.64
CLK3-227ENST00000570296 TBCAO75347 108 aaKnown RBP19.06■□□□□ 0.64
CLK3-227ENST00000570296 PENKP01210 267 aaPredicted RBP19.06■□□□□ 0.64
CLK3-227ENST00000570296 PTPN1P18031 435 aaKnown RBP19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms