RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 SLC45A4Q5BKX6 768 aa21.03■□□□□ 0.96
CLN3-230ENST00000568076 AGMOQ6ZNB7 445 aa21.03■□□□□ 0.96
CLN3-230ENST00000568076 HFE2Q6ZVN8 426 aa21.03■□□□□ 0.96
CLN3-230ENST00000568076 CDKL3Q8IVW4 592 aaPredicted RBP21.03■□□□□ 0.96
CLN3-230ENST00000568076 MED10Q9BTT4 135 aa21.03■□□□□ 0.96
CLN3-230ENST00000568076 DTLQ9NZJ0 730 aa21.03■□□□□ 0.96
CLN3-230ENST00000568076 GRID1Q9ULK0 1009 aa21.03■□□□□ 0.96
CLN3-230ENST00000568076 CAPN7Q9Y6W3 813 aa21.03■□□□□ 0.96
CLN3-230ENST00000568076 TCRBV9S1A1TA0A576 114 aa21.03■□□□□ 0.96
CLN3-230ENST00000568076 ZFXP17010 805 aaPredicted RBP21.03■□□□□ 0.96
CLN3-230ENST00000568076 TAC1P20366 129 aa21.03■□□□□ 0.96
CLN3-230ENST00000568076 RPA3P35244 121 aaPredicted RBP21.03■□□□□ 0.96
CLN3-230ENST00000568076 NR2C2P49116 596 aa21.03■□□□□ 0.96
CLN3-230ENST00000568076 XRCC4Q13426 336 aa21.03■□□□□ 0.96
CLN3-230ENST00000568076 LACTB2Q53H82 288 aaPredicted RBP21.03■□□□□ 0.96
CLN3-230ENST00000568076 SYPL2Q5VXT5 272 aa21.03■□□□□ 0.96
CLN3-230ENST00000568076 CGB2Q6NT52 195 aa21.03■□□□□ 0.96
CLN3-230ENST00000568076 KCNT2Q6UVM3 1135 aa21.03■□□□□ 0.96
CLN3-230ENST00000568076 RSPH3Q86UC2 560 aa21.03■□□□□ 0.96
CLN3-230ENST00000568076 CAND1Q86VP6 1230 aaKnown RBP21.03■□□□□ 0.96
CLN3-230ENST00000568076 NPY6RQ99463 290 aa21.03■□□□□ 0.96
CLN3-230ENST00000568076 PAAF1Q9BRP4 392 aa21.03■□□□□ 0.96
CLN3-230ENST00000568076 KDM4CQ9H3R0 1056 aa21.03■□□□□ 0.96
CLN3-230ENST00000568076 CHST12Q9NRB3 414 aa21.03■□□□□ 0.96
CLN3-230ENST00000568076 KRT82Q9NSB4 513 aa21.03■□□□□ 0.96
CLN3-230ENST00000568076 TMEM30AQ9NV96 361 aa21.03■□□□□ 0.96
CLN3-230ENST00000568076 SMG5Q9UPR3 1016 aaKnown RBP21.03■□□□□ 0.96
CLN3-230ENST00000568076 ARL5CA6NH57 179 aa21.02■□□□□ 0.96
CLN3-230ENST00000568076 METTL18O95568 372 aa21.02■□□□□ 0.96
CLN3-230ENST00000568076 SCNN1GP51170 649 aa21.02■□□□□ 0.96
CLN3-230ENST00000568076 IL9RQ01113 521 aa21.02■□□□□ 0.96
CLN3-230ENST00000568076 ZKSCAN8Q15776 578 aaPredicted RBP21.02■□□□□ 0.96
CLN3-230ENST00000568076 PACS2Q86VP3 889 aa21.02■□□□□ 0.96
CLN3-230ENST00000568076 QKIQ96PU8 341 aaKnown RBP eCLIP21.02■□□□□ 0.96
CLN3-230ENST00000568076 SLC2A13Q96QE2 648 aa21.02■□□□□ 0.96
CLN3-230ENST00000568076 PAIP2Q9BPZ3 127 aaKnown RBP21.02■□□□□ 0.96
CLN3-230ENST00000568076 KLC2Q9H0B6 622 aa21.02■□□□□ 0.96
CLN3-230ENST00000568076 LRRC4Q9HBW1 653 aa21.02■□□□□ 0.96
CLN3-230ENST00000568076 NR2E3Q9Y5X4 410 aa21.02■□□□□ 0.96
CLN3-230ENST00000568076 MYBPHLA2RUH7 354 aa21.01■□□□□ 0.95
CLN3-230ENST00000568076 NRP1O14786 923 aa21.01■□□□□ 0.95
CLN3-230ENST00000568076 GCATO75600 419 aa21.01■□□□□ 0.95
CLN3-230ENST00000568076 APRTP07741 180 aa21.01■□□□□ 0.95
CLN3-230ENST00000568076 FAM200BP0CF97 657 aa21.01■□□□□ 0.95
CLN3-230ENST00000568076 KRT4P19013 534 aa21.01■□□□□ 0.95
CLN3-230ENST00000568076 NOS2P35228 1153 aa21.01■□□□□ 0.95
CLN3-230ENST00000568076 TKTL1P51854 596 aa21.01■□□□□ 0.95
CLN3-230ENST00000568076 SLC1A5Q15758 541 aa21.01■□□□□ 0.95
CLN3-230ENST00000568076 RNF169Q8NCN4 708 aa21.01■□□□□ 0.95
CLN3-230ENST00000568076 SMOQ99835 787 aa21.01■□□□□ 0.95
CLN3-230ENST00000568076 SYT15Q9BQS2 421 aa21.01■□□□□ 0.95
CLN3-230ENST00000568076 USP15Q9Y4E8 981 aaPredicted RBP21.01■□□□□ 0.95
CLN3-230ENST00000568076 SYNJ2BP-COX16A0A087WUM0 186 aa21.01■□□□□ 0.95
CLN3-230ENST00000568076 C1QAP02745 245 aa21.01■□□□□ 0.95
CLN3-230ENST00000568076 FYNP06241 537 aa21.01■□□□□ 0.95
CLN3-230ENST00000568076 ATP2A2P16615 1042 aaKnown RBP21.01■□□□□ 0.95
CLN3-230ENST00000568076 MSH2P43246 934 aa21.01■□□□□ 0.95
CLN3-230ENST00000568076 CACNA2D1P54289 1103 aa21.01■□□□□ 0.95
CLN3-230ENST00000568076 MFSD14CQ5VZR4 134 aa21.01■□□□□ 0.95
CLN3-230ENST00000568076 GPRIN1Q7Z2K8 1008 aa21.01■□□□□ 0.95
CLN3-230ENST00000568076 ZMIZ2Q8NF64 920 aa21.01■□□□□ 0.95
CLN3-230ENST00000568076 OLFM3Q96PB7 478 aa21.01■□□□□ 0.95
CLN3-230ENST00000568076 CYTH2Q99418 400 aa21.01■□□□□ 0.95
CLN3-230ENST00000568076 PLAC1Q9HBJ0 212 aa21.01■□□□□ 0.95
CLN3-230ENST00000568076 ARHGEF4Q9NR80 690 aa21.01■□□□□ 0.95
CLN3-230ENST00000568076 COX16Q9P0S2 106 aa21.01■□□□□ 0.95
CLN3-230ENST00000568076 CASTOR2A6NHX0 329 aa21■□□□□ 0.95
CLN3-230ENST00000568076 MGEA5O60502 916 aa21■□□□□ 0.95
CLN3-230ENST00000568076 ADAMTS4O75173 837 aa21■□□□□ 0.95
CLN3-230ENST00000568076 DGKIO75912 1065 aa21■□□□□ 0.95
CLN3-230ENST00000568076 VAV1P15498 845 aa21■□□□□ 0.95
CLN3-230ENST00000568076 CA4P22748 312 aa21■□□□□ 0.95
CLN3-230ENST00000568076 YWHAGP61981 247 aaKnown RBP eCLIP21■□□□□ 0.95
CLN3-230ENST00000568076 KBTBD12Q3ZCT8 623 aa21■□□□□ 0.95
CLN3-230ENST00000568076 ZNF534Q76KX8 674 aa21■□□□□ 0.95
CLN3-230ENST00000568076 FAM35AQ86V20 835 aa21■□□□□ 0.95
CLN3-230ENST00000568076 SIX6OS1Q8N1H7 587 aa21■□□□□ 0.95
CLN3-230ENST00000568076 TMEM86AQ8N2M4 240 aa21■□□□□ 0.95
CLN3-230ENST00000568076 PCED1BQ96HM7 432 aa21■□□□□ 0.95
CLN3-230ENST00000568076 KCNK16Q96T55 309 aa21■□□□□ 0.95
CLN3-230ENST00000568076 ACTR5Q9H9F9 607 aaPredicted RBP21■□□□□ 0.95
CLN3-230ENST00000568076 POPDC2Q9HBU9 364 aa21■□□□□ 0.95
CLN3-230ENST00000568076 GIT1Q9Y2X7 761 aa21■□□□□ 0.95
CLN3-230ENST00000568076 M0QYT0 321 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 ARL4AP40617 200 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 LHX1P48742 406 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 FLT3LGP49771 235 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 SREBF2Q12772 1141 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 DSTYKQ6XUX3 929 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 MRPL10Q7Z7H8 261 aaKnown RBP20.99■□□□□ 0.95
CLN3-230ENST00000568076 PRPF39Q86UA1 669 aaKnown RBP20.99■□□□□ 0.95
CLN3-230ENST00000568076 RPAINQ86UA6 219 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 PSTKQ8IV42 348 aaKnown RBP20.99■□□□□ 0.95
CLN3-230ENST00000568076 HACE1Q8IYU2 909 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 NETO2Q8NC67 525 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 SPOCK2Q92563 424 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 FRMD8Q9BZ67 464 aaPredicted RBP20.99■□□□□ 0.95
CLN3-230ENST00000568076 ULBP1Q9BZM6 244 aa20.99■□□□□ 0.95
CLN3-230ENST00000568076 SSU72Q9NP77 194 aaKnown RBP20.99■□□□□ 0.95
CLN3-230ENST00000568076 PIGVQ9NUD9 493 aa20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms