RNA–Protein interactions for RNA: ENST00000568034.1

COMMD4-222, Transcript of COMM domain containing 4, human

TSL 5

Gene COMMD4, Length 1,085 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-222	ENST00000568034	GALC	P54803	685 aa		18.78	■□□□□ 0.6
COMMD4-222	ENST00000568034	RNASE9	P60153	205 aa	Known RBP	18.78	■□□□□ 0.6
COMMD4-222	ENST00000568034	FCHO2	Q0JRZ9	810 aa		18.78	■□□□□ 0.6
COMMD4-222	ENST00000568034	DCAF6	Q58WW2	860 aa		18.78	■□□□□ 0.6
COMMD4-222	ENST00000568034	BNIPL	Q7Z465	357 aa		18.78	■□□□□ 0.6
COMMD4-222	ENST00000568034	MFSD6L	Q8IWD5	586 aa		18.78	■□□□□ 0.6
COMMD4-222	ENST00000568034	GJD3	Q8N144	294 aa		18.78	■□□□□ 0.6
COMMD4-222	ENST00000568034	ADAM32	Q8TC27	787 aa		18.78	■□□□□ 0.6
COMMD4-222	ENST00000568034	BPIFB1	Q8TDL5	484 aa		18.78	■□□□□ 0.6
COMMD4-222	ENST00000568034	E2F7	Q96AV8	911 aa		18.78	■□□□□ 0.6
COMMD4-222	ENST00000568034	ARHGEF26	Q96DR7	871 aa		18.78	■□□□□ 0.6
COMMD4-222	ENST00000568034	TRIM11	Q96F44	468 aa		18.78	■□□□□ 0.6
COMMD4-222	ENST00000568034	ASIC4	Q96FT7	647 aa		18.78	■□□□□ 0.6
COMMD4-222	ENST00000568034	NPY6R	Q99463	290 aa		18.78	■□□□□ 0.6
COMMD4-222	ENST00000568034	FASTKD2	Q9NYY8	710 aa	Known RBP eCLIP	18.78	■□□□□ 0.6
COMMD4-222	ENST00000568034	CFAP97	Q9P2B7	532 aa		18.78	■□□□□ 0.6
COMMD4-222	ENST00000568034		A0A0C4DFX4	3053 aa		18.77	■□□□□ 0.6
COMMD4-222	ENST00000568034	SLC12A8	A0AV02	714 aa		18.77	■□□□□ 0.6
COMMD4-222	ENST00000568034	ANKRD62	A6NC57	917 aa		18.77	■□□□□ 0.6
COMMD4-222	ENST00000568034	IRAK2	O43187	625 aa		18.77	■□□□□ 0.6
COMMD4-222	ENST00000568034	STC2	O76061	302 aa		18.77	■□□□□ 0.6
COMMD4-222	ENST00000568034	KRT3	P12035	628 aa		18.77	■□□□□ 0.6
COMMD4-222	ENST00000568034	RFC1	P35251	1148 aa	Predicted RBP	18.77	■□□□□ 0.6
COMMD4-222	ENST00000568034	RPL7A	P62424	266 aa	Known RBP	18.77	■□□□□ 0.6
COMMD4-222	ENST00000568034	GRM2	Q14416	872 aa		18.77	■□□□□ 0.6
COMMD4-222	ENST00000568034	TRIP4	Q15650	581 aa	Predicted RBP	18.77	■□□□□ 0.6
COMMD4-222	ENST00000568034	RNF135	Q8IUD6	432 aa		18.77	■□□□□ 0.6
COMMD4-222	ENST00000568034	SLC44A3	Q8N4M1	653 aa		18.77	■□□□□ 0.6
COMMD4-222	ENST00000568034	DEPDC1B	Q8WUY9	529 aa		18.77	■□□□□ 0.6
COMMD4-222	ENST00000568034	SLC39A13	Q96H72	371 aa		18.77	■□□□□ 0.6
COMMD4-222	ENST00000568034	SELENOO	Q9BVL4	669 aa		18.77	■□□□□ 0.6
COMMD4-222	ENST00000568034	HBS1L	Q9Y450	684 aa	Known RBP	18.77	■□□□□ 0.6
COMMD4-222	ENST00000568034	EIF3CL	B5ME19	914 aa	Known RBP	18.76	■□□□□ 0.59
COMMD4-222	ENST00000568034	DPYSL4	O14531	572 aa		18.76	■□□□□ 0.59
COMMD4-222	ENST00000568034	TRUB2	O95900	331 aa	Known RBP	18.76	■□□□□ 0.59
COMMD4-222	ENST00000568034	CYP1A2	P05177	515 aa		18.76	■□□□□ 0.59
COMMD4-222	ENST00000568034	IRF1	P10914	325 aa		18.76	■□□□□ 0.59
COMMD4-222	ENST00000568034	PSMC3	P17980	439 aa		18.76	■□□□□ 0.59
COMMD4-222	ENST00000568034	OGDH	Q02218	1023 aa		18.76	■□□□□ 0.59
COMMD4-222	ENST00000568034	NNT	Q13423	1086 aa		18.76	■□□□□ 0.59
COMMD4-222	ENST00000568034		Q6ZNB5	142 aa		18.76	■□□□□ 0.59
COMMD4-222	ENST00000568034	DDX42	Q86XP3	938 aa	Known RBP eCLIP	18.76	■□□□□ 0.59
COMMD4-222	ENST00000568034	RXFP2	Q8WXD0	754 aa		18.76	■□□□□ 0.59
COMMD4-222	ENST00000568034	FCRL2	Q96LA5	508 aa	Predicted RBP	18.76	■□□□□ 0.59
COMMD4-222	ENST00000568034	CFAP57	Q96MR6	1250 aa		18.76	■□□□□ 0.59
COMMD4-222	ENST00000568034	SERPINB11	Q96P15	392 aa		18.76	■□□□□ 0.59
COMMD4-222	ENST00000568034	MCEE	Q96PE7	176 aa		18.76	■□□□□ 0.59
COMMD4-222	ENST00000568034	UHRF1	Q96T88	793 aa	Predicted RBP	18.76	■□□□□ 0.59
COMMD4-222	ENST00000568034	EIF3C	Q99613	913 aa	Known RBP	18.76	■□□□□ 0.59
COMMD4-222	ENST00000568034	COL25A1	Q9BXS0	654 aa	Predicted RBP	18.76	■□□□□ 0.59
COMMD4-222	ENST00000568034	TRIM7	Q9C029	511 aa		18.76	■□□□□ 0.59
COMMD4-222	ENST00000568034	PARVA	Q9NVD7	372 aa		18.76	■□□□□ 0.59
COMMD4-222	ENST00000568034	REXO2	Q9Y3B8	237 aa	Known RBP	18.76	■□□□□ 0.59
COMMD4-222	ENST00000568034	EPN1	Q9Y6I3	576 aa	Predicted RBP	18.76	■□□□□ 0.59
COMMD4-222	ENST00000568034	NCOR1	O75376	2440 aa		18.76	■□□□□ 0.59
COMMD4-222	ENST00000568034	COL4A2	P08572	1712 aa		18.76	■□□□□ 0.59
COMMD4-222	ENST00000568034	TTC28	Q96AY4	2481 aa		18.76	■□□□□ 0.59
COMMD4-222	ENST00000568034	ARNTL	O00327	626 aa		18.75	■□□□□ 0.59
COMMD4-222	ENST00000568034	SCAMP3	O14828	347 aa	Known RBP	18.75	■□□□□ 0.59
COMMD4-222	ENST00000568034	NDUFA10	O95299	355 aa		18.75	■□□□□ 0.59
COMMD4-222	ENST00000568034	KLKB1	P03952	638 aa		18.75	■□□□□ 0.59
COMMD4-222	ENST00000568034	HMBS	P08397	361 aa		18.75	■□□□□ 0.59
COMMD4-222	ENST00000568034	H2AFZ	P0C0S5	128 aa		18.75	■□□□□ 0.59
COMMD4-222	ENST00000568034	TMEM253	P0C7T8	217 aa		18.75	■□□□□ 0.59
COMMD4-222	ENST00000568034	CYLC1	P35663	651 aa	Predicted RBP	18.75	■□□□□ 0.59
COMMD4-222	ENST00000568034	SULT1E1	P49888	294 aa		18.75	■□□□□ 0.59
COMMD4-222	ENST00000568034	GPC5	P78333	572 aa		18.75	■□□□□ 0.59
COMMD4-222	ENST00000568034	COG7	P83436	770 aa		18.75	■□□□□ 0.59
COMMD4-222	ENST00000568034	ZNF252P-AS1	Q0IIN9	211 aa		18.75	■□□□□ 0.59
COMMD4-222	ENST00000568034	SLC25A52	Q3SY17	297 aa		18.75	■□□□□ 0.59
COMMD4-222	ENST00000568034	CCDC14	Q49A88	953 aa		18.75	■□□□□ 0.59
COMMD4-222	ENST00000568034	H2AFV	Q71UI9	128 aa		18.75	■□□□□ 0.59
COMMD4-222	ENST00000568034	KIAA1958	Q8N8K9	716 aa		18.75	■□□□□ 0.59
COMMD4-222	ENST00000568034	PLD4	Q96BZ4	506 aa		18.75	■□□□□ 0.59
COMMD4-222	ENST00000568034	PGAP3	Q96FM1	320 aa	Predicted RBP	18.75	■□□□□ 0.59
COMMD4-222	ENST00000568034	TBCB	Q99426	244 aa		18.75	■□□□□ 0.59
COMMD4-222	ENST00000568034	RRN3	Q9NYV6	651 aa		18.75	■□□□□ 0.59
COMMD4-222	ENST00000568034	MYO1A	Q9UBC5	1043 aa		18.75	■□□□□ 0.59
COMMD4-222	ENST00000568034	COL4A3	Q01955	1670 aa		18.74	■□□□□ 0.59
COMMD4-222	ENST00000568034	E2F8	A0AVK6	867 aa		18.74	■□□□□ 0.59
COMMD4-222	ENST00000568034	TMEM191C	A6NGB0	347 aa		18.74	■□□□□ 0.59
COMMD4-222	ENST00000568034	NARS	O43776	548 aa	Known RBP	18.74	■□□□□ 0.59
COMMD4-222	ENST00000568034	PDGFRA	P16234	1089 aa		18.74	■□□□□ 0.59
COMMD4-222	ENST00000568034	GPD1	P21695	349 aa		18.74	■□□□□ 0.59
COMMD4-222	ENST00000568034	PTPN9	P43378	593 aa		18.74	■□□□□ 0.59
COMMD4-222	ENST00000568034	ATXN1	P54253	815 aa	Known RBP	18.74	■□□□□ 0.59
COMMD4-222	ENST00000568034	TBX4	P57082	545 aa		18.74	■□□□□ 0.59
COMMD4-222	ENST00000568034	CCZ1B	P86790	482 aa		18.74	■□□□□ 0.59
COMMD4-222	ENST00000568034	CCZ1	P86791	482 aa	Predicted RBP	18.74	■□□□□ 0.59
COMMD4-222	ENST00000568034	RING1	Q06587	406 aa		18.74	■□□□□ 0.59
COMMD4-222	ENST00000568034	TDG	Q13569	410 aa		18.74	■□□□□ 0.59
COMMD4-222	ENST00000568034	C15orf59	Q2T9L4	293 aa	Predicted RBP	18.74	■□□□□ 0.59
COMMD4-222	ENST00000568034	RAB6C	Q53S08	254 aa		18.74	■□□□□ 0.59
COMMD4-222	ENST00000568034	HTR3D	Q70Z44	454 aa		18.74	■□□□□ 0.59
COMMD4-222	ENST00000568034	LRRC8A	Q8IWT6	810 aa		18.74	■□□□□ 0.59
COMMD4-222	ENST00000568034	TTC16	Q8NEE8	873 aa		18.74	■□□□□ 0.59
COMMD4-222	ENST00000568034	CENPI	Q92674	756 aa	Predicted RBP	18.74	■□□□□ 0.59
COMMD4-222	ENST00000568034	ZFYVE19	Q96K21	471 aa		18.74	■□□□□ 0.59
COMMD4-222	ENST00000568034	FAM83C	Q9BQN1	747 aa		18.74	■□□□□ 0.59
COMMD4-222	ENST00000568034	RAB6C	Q9H0N0	254 aa		18.74	■□□□□ 0.59

Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms