RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 HMGB4Q8WW32 186 aa23.56■■□□□ 1.36
CLN3-215ENST00000565236 PLK2Q9NYY3 685 aa23.56■■□□□ 1.36
CLN3-215ENST00000565236 SPTBN2O15020 2390 aa23.55■■□□□ 1.36
CLN3-215ENST00000565236 TCRBV21S2A2A0A5A6 115 aa23.55■■□□□ 1.36
CLN3-215ENST00000565236 SLC12A8A0AV02 714 aa23.55■■□□□ 1.36
CLN3-215ENST00000565236 O00370 1275 aa23.55■■□□□ 1.36
CLN3-215ENST00000565236 SETSIPP0DME0 302 aa23.55■■□□□ 1.36
CLN3-215ENST00000565236 NTSR1P30989 418 aa23.55■■□□□ 1.36
CLN3-215ENST00000565236 CORO1AP31146 461 aaKnown RBP23.55■■□□□ 1.36
CLN3-215ENST00000565236 DGKGP49619 791 aa23.55■■□□□ 1.36
CLN3-215ENST00000565236 SDE2Q6IQ49 451 aa23.55■■□□□ 1.36
CLN3-215ENST00000565236 SIX6OS1Q8N1H7 587 aa23.55■■□□□ 1.36
CLN3-215ENST00000565236 OLIG1Q8TAK6 271 aa23.55■■□□□ 1.36
CLN3-215ENST00000565236 NDRG1Q92597 394 aaKnown RBP23.55■■□□□ 1.36
CLN3-215ENST00000565236 SRRTQ9BXP5 876 aaKnown RBP23.55■■□□□ 1.36
CLN3-215ENST00000565236 SMOC1Q9H4F8 434 aa23.55■■□□□ 1.36
CLN3-215ENST00000565236 OLA1Q9NTK5 396 aaKnown RBP23.55■■□□□ 1.36
CLN3-215ENST00000565236 MAP3K13O43283 966 aa23.54■■□□□ 1.36
CLN3-215ENST00000565236 CAVIN2O95810 425 aa23.54■■□□□ 1.36
CLN3-215ENST00000565236 ADIGQ0VDE8 80 aa23.54■■□□□ 1.36
CLN3-215ENST00000565236 KCNH2Q12809 1159 aa23.54■■□□□ 1.36
CLN3-215ENST00000565236 BYSLQ13895 437 aaKnown RBP23.54■■□□□ 1.36
CLN3-215ENST00000565236 PMS2CLQ68D20 193 aa23.54■■□□□ 1.36
CLN3-215ENST00000565236 LCLAT1Q6UWP7 414 aa23.54■■□□□ 1.36
CLN3-215ENST00000565236 DENND1CQ8IV53 801 aa23.54■■□□□ 1.36
CLN3-215ENST00000565236 TRIM59Q8IWR1 403 aa23.54■■□□□ 1.36
CLN3-215ENST00000565236 EHBP1Q8NDI1 1231 aa23.54■■□□□ 1.36
CLN3-215ENST00000565236 LMO3Q8TAP4 145 aa23.54■■□□□ 1.36
CLN3-215ENST00000565236 RNF139Q8WU17 664 aa23.54■■□□□ 1.36
CLN3-215ENST00000565236 KCTD13Q8WZ19 329 aa23.54■■□□□ 1.36
CLN3-215ENST00000565236 SPACA7Q96KW9 195 aa23.54■■□□□ 1.36
CLN3-215ENST00000565236 AGO1Q9UL18 857 aaKnown RBP23.54■■□□□ 1.36
CLN3-215ENST00000565236 THADAQ6YHU6 1953 aa23.54■■□□□ 1.36
CLN3-215ENST00000565236 BCLAF3A2AJT9 711 aaKnown RBP23.53■■□□□ 1.36
CLN3-215ENST00000565236 PRRT4C9JH25 899 aa23.53■■□□□ 1.36
CLN3-215ENST00000565236 ZBTB24O43167 697 aaPredicted RBP23.53■■□□□ 1.36
CLN3-215ENST00000565236 FGFR1OPO95684 399 aaKnown RBP23.53■■□□□ 1.36
CLN3-215ENST00000565236 CISD3P0C7P0 127 aa23.53■■□□□ 1.36
CLN3-215ENST00000565236 HOXB2P14652 356 aa23.53■■□□□ 1.36
CLN3-215ENST00000565236 BCKDHBP21953 392 aa23.53■■□□□ 1.36
CLN3-215ENST00000565236 P2RY2P41231 377 aa23.53■■□□□ 1.36
CLN3-215ENST00000565236 WASP42768 502 aa23.53■■□□□ 1.36
CLN3-215ENST00000565236 EGFLAMQ63HQ2 1017 aa23.53■■□□□ 1.36
CLN3-215ENST00000565236 TOGARAM2Q6ZUX3 1019 aa23.53■■□□□ 1.36
CLN3-215ENST00000565236 RRAGAQ7L523 313 aa23.53■■□□□ 1.36
CLN3-215ENST00000565236 CHPFQ8IZ52 775 aa23.53■■□□□ 1.36
CLN3-215ENST00000565236 RLN3Q8WXF3 142 aa23.53■■□□□ 1.36
CLN3-215ENST00000565236 TFAP2BQ92481 460 aa23.53■■□□□ 1.36
CLN3-215ENST00000565236 KAT5Q92993 513 aa23.53■■□□□ 1.36
CLN3-215ENST00000565236 HCN2Q9UL51 889 aa23.53■■□□□ 1.36
CLN3-215ENST00000565236 UTP18Q9Y5J1 556 aaKnown RBP eCLIP23.53■■□□□ 1.36
CLN3-215ENST00000565236 NCOR2Q9Y618 2525 aa23.52■■□□□ 1.36
CLN3-215ENST00000565236 RNF225M0QZC1 329 aaPredicted RBP23.52■■□□□ 1.36
CLN3-215ENST00000565236 AFPP02771 609 aaKnown RBP23.52■■□□□ 1.36
CLN3-215ENST00000565236 LCP1P13796 627 aa23.52■■□□□ 1.36
CLN3-215ENST00000565236 MARSP56192 900 aaKnown RBP23.52■■□□□ 1.36
CLN3-215ENST00000565236 UBE2HP62256 183 aa23.52■■□□□ 1.36
CLN3-215ENST00000565236 STILQ15468 1287 aa23.52■■□□□ 1.36
CLN3-215ENST00000565236 CNGA2Q16280 664 aa23.52■■□□□ 1.36
CLN3-215ENST00000565236 PKDCCQ504Y2 493 aa23.52■■□□□ 1.36
CLN3-215ENST00000565236 BSPRYQ5W0U4 402 aa23.52■■□□□ 1.36
CLN3-215ENST00000565236 IL31Q6EBC2 164 aa23.52■■□□□ 1.36
CLN3-215ENST00000565236 BHLHA9Q7RTU4 235 aa23.52■■□□□ 1.36
CLN3-215ENST00000565236 TRIML1Q8N9V2 468 aa23.52■■□□□ 1.36
CLN3-215ENST00000565236 PLD4Q96BZ4 506 aa23.52■■□□□ 1.36
CLN3-215ENST00000565236 CNGB3Q9NQW8 809 aa23.52■■□□□ 1.36
CLN3-215ENST00000565236 RXFP3Q9NSD7 469 aa23.52■■□□□ 1.36
CLN3-215ENST00000565236 FBXO10Q9UK96 956 aa23.52■■□□□ 1.36
CLN3-215ENST00000565236 YJEFN3A6XGL0 299 aa23.51■■□□□ 1.35
CLN3-215ENST00000565236 E7ENQ6 273 aa23.51■■□□□ 1.35
CLN3-215ENST00000565236 PENKP01210 267 aaPredicted RBP23.51■■□□□ 1.35
CLN3-215ENST00000565236 CYBBP04839 570 aa23.51■■□□□ 1.35
CLN3-215ENST00000565236 DHPSP49366 369 aaPredicted RBP23.51■■□□□ 1.35
CLN3-215ENST00000565236 LIMK1P53667 647 aa23.51■■□□□ 1.35
CLN3-215ENST00000565236 GCNT1Q02742 428 aa23.51■■□□□ 1.35
CLN3-215ENST00000565236 CAMK4Q16566 473 aa23.51■■□□□ 1.35
CLN3-215ENST00000565236 FMNL3Q8IVF7 1028 aa23.51■■□□□ 1.35
CLN3-215ENST00000565236 RBBP8NLQ8NC74 664 aaPredicted RBP23.51■■□□□ 1.35
CLN3-215ENST00000565236 SLC35F5Q8WV83 523 aa23.51■■□□□ 1.35
CLN3-215ENST00000565236 EDEM1Q92611 657 aa23.51■■□□□ 1.35
CLN3-215ENST00000565236 ACOX2Q99424 681 aa23.51■■□□□ 1.35
CLN3-215ENST00000565236 ABCC13Q9NSE7 274 aa23.51■■□□□ 1.35
CLN3-215ENST00000565236 KIAA1468Q9P260 1216 aa23.51■■□□□ 1.35
CLN3-215ENST00000565236 LAMA1P25391 3075 aa23.51■■□□□ 1.35
CLN3-215ENST00000565236 BRD2P25440 801 aaKnown RBP23.5■■□□□ 1.35
CLN3-215ENST00000565236 HARS2P49590 506 aaKnown RBP23.5■■□□□ 1.35
CLN3-215ENST00000565236 RGS7P49802 495 aa23.5■■□□□ 1.35
CLN3-215ENST00000565236 FYB2Q5VWT5 728 aa23.5■■□□□ 1.35
CLN3-215ENST00000565236 TCEAL6Q6IPX3 200 aa23.5■■□□□ 1.35
CLN3-215ENST00000565236 LPCAT2Q7L5N7 544 aa23.5■■□□□ 1.35
CLN3-215ENST00000565236 CYP2U1Q7Z449 544 aa23.5■■□□□ 1.35
CLN3-215ENST00000565236 ARHGEF19Q8IW93 802 aa23.5■■□□□ 1.35
CLN3-215ENST00000565236 SCML4Q8N228 414 aa23.5■■□□□ 1.35
CLN3-215ENST00000565236 DDX1Q92499 740 aaKnown RBP23.5■■□□□ 1.35
CLN3-215ENST00000565236 TCEAL3Q969E4 200 aa23.5■■□□□ 1.35
CLN3-215ENST00000565236 WDR3Q9UNX4 943 aaKnown RBP eCLIP23.5■■□□□ 1.35
CLN3-215ENST00000565236 SLC27A6Q9Y2P4 619 aa23.5■■□□□ 1.35
CLN3-215ENST00000565236 HBS1LQ9Y450 684 aaKnown RBP23.5■■□□□ 1.35
CLN3-215ENST00000565236 NUP205Q92621 2012 aa23.49■■□□□ 1.35
CLN3-215ENST00000565236 M0QYV0 167 aa23.49■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms