RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 FYB2Q5VWT5 728 aa18.06■□□□□ 0.48
VPS9D1-203ENST00000563798 PEAR1Q5VY43 1037 aaPredicted RBP18.06■□□□□ 0.48
VPS9D1-203ENST00000563798 EGFLAMQ63HQ2 1017 aa18.06■□□□□ 0.48
VPS9D1-203ENST00000563798 TOGARAM2Q6ZUX3 1019 aa18.06■□□□□ 0.48
VPS9D1-203ENST00000563798 BHLHA9Q7RTU4 235 aa18.06■□□□□ 0.48
VPS9D1-203ENST00000563798 FAM217AQ8IXS0 508 aa18.06■□□□□ 0.48
VPS9D1-203ENST00000563798 SCML4Q8N228 414 aa18.06■□□□□ 0.48
VPS9D1-203ENST00000563798 CPXM2Q8N436 756 aa18.06■□□□□ 0.48
VPS9D1-203ENST00000563798 P2RY11Q96G91 374 aa18.06■□□□□ 0.48
VPS9D1-203ENST00000563798 CEP63Q96MT8 703 aa18.06■□□□□ 0.48
VPS9D1-203ENST00000563798 MYO18AQ92614 2054 aaKnown RBP18.06■□□□□ 0.48
VPS9D1-203ENST00000563798 NUP205Q92621 2012 aa18.06■□□□□ 0.48
VPS9D1-203ENST00000563798 THADAQ6YHU6 1953 aa18.06■□□□□ 0.48
VPS9D1-203ENST00000563798 VDRP11473 427 aa18.05■□□□□ 0.48
VPS9D1-203ENST00000563798 HOXD12P35452 270 aa18.05■□□□□ 0.48
VPS9D1-203ENST00000563798 DHPSP49366 369 aaPredicted RBP18.05■□□□□ 0.48
VPS9D1-203ENST00000563798 TKTL1P51854 596 aa18.05■□□□□ 0.48
VPS9D1-203ENST00000563798 PDE4CQ08493 712 aa18.05■□□□□ 0.48
VPS9D1-203ENST00000563798 BST2Q10589 180 aaKnown RBP18.05■□□□□ 0.48
VPS9D1-203ENST00000563798 EFEMP1Q12805 493 aa18.05■□□□□ 0.48
VPS9D1-203ENST00000563798 PKDCCQ504Y2 493 aa18.05■□□□□ 0.48
VPS9D1-203ENST00000563798 SDE2Q6IQ49 451 aa18.05■□□□□ 0.48
VPS9D1-203ENST00000563798 FRMD1Q8N878 549 aa18.05■□□□□ 0.48
VPS9D1-203ENST00000563798 KCTD13Q8WZ19 329 aa18.05■□□□□ 0.48
VPS9D1-203ENST00000563798 ERCC4Q92889 916 aaPredicted RBP18.05■□□□□ 0.48
VPS9D1-203ENST00000563798 ACOX2Q99424 681 aa18.05■□□□□ 0.48
VPS9D1-203ENST00000563798 MARCH2Q9P0N8 246 aa18.05■□□□□ 0.48
VPS9D1-203ENST00000563798 RASAL2Q9UJF2 1139 aa18.05■□□□□ 0.48
VPS9D1-203ENST00000563798 TSPAN16Q9UKR8 245 aa18.05■□□□□ 0.48
VPS9D1-203ENST00000563798 AGO1Q9UL18 857 aaKnown RBP18.05■□□□□ 0.48
VPS9D1-203ENST00000563798 STRIP2Q9ULQ0 834 aa18.05■□□□□ 0.48
VPS9D1-203ENST00000563798 TULP2O00295 520 aa18.04■□□□□ 0.48
VPS9D1-203ENST00000563798 O00370 1275 aa18.04■□□□□ 0.48
VPS9D1-203ENST00000563798 NPC1O15118 1278 aa18.04■□□□□ 0.48
VPS9D1-203ENST00000563798 MAP3K13O43283 966 aa18.04■□□□□ 0.48
VPS9D1-203ENST00000563798 ZNF217O75362 1048 aa18.04■□□□□ 0.48
VPS9D1-203ENST00000563798 CORO1AP31146 461 aaKnown RBP18.04■□□□□ 0.48
VPS9D1-203ENST00000563798 FMO5P49326 533 aa18.04■□□□□ 0.48
VPS9D1-203ENST00000563798 STIM1Q13586 685 aa18.04■□□□□ 0.48
VPS9D1-203ENST00000563798 ENPP2Q13822 863 aa18.04■□□□□ 0.48
VPS9D1-203ENST00000563798 TRIP4Q15650 581 aaPredicted RBP18.04■□□□□ 0.48
VPS9D1-203ENST00000563798 GOLGA7BQ2TAP0 167 aa18.04■□□□□ 0.48
VPS9D1-203ENST00000563798 SLC36A4Q6YBV0 504 aa18.04■□□□□ 0.48
VPS9D1-203ENST00000563798 SYT12Q8IV01 421 aa18.04■□□□□ 0.48
VPS9D1-203ENST00000563798 CHPFQ8IZ52 775 aa18.04■□□□□ 0.48
VPS9D1-203ENST00000563798 IPO4Q8TEX9 1081 aaKnown RBP18.04■□□□□ 0.48
VPS9D1-203ENST00000563798 PLD4Q96BZ4 506 aa18.04■□□□□ 0.48
VPS9D1-203ENST00000563798 CNTNAP3BQ96NU0 1288 aa18.04■□□□□ 0.48
VPS9D1-203ENST00000563798 CNTNAP3Q9BZ76 1288 aa18.04■□□□□ 0.48
VPS9D1-203ENST00000563798 ULBP1Q9BZM6 244 aa18.04■□□□□ 0.48
VPS9D1-203ENST00000563798 OLA1Q9NTK5 396 aaKnown RBP18.04■□□□□ 0.48
VPS9D1-203ENST00000563798 CALCOCO1Q9P1Z2 691 aa18.04■□□□□ 0.48
VPS9D1-203ENST00000563798 HESX1Q9UBX0 185 aa18.04■□□□□ 0.48
VPS9D1-203ENST00000563798 MAN1B1Q9UKM7 699 aa18.04■□□□□ 0.48
VPS9D1-203ENST00000563798 CNOT1A5YKK6 2376 aaKnown RBP18.04■□□□□ 0.48
VPS9D1-203ENST00000563798 TNRC6BQ9UPQ9 1833 aaKnown RBP18.03■□□□□ 0.48
VPS9D1-203ENST00000563798 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa18.03■□□□□ 0.48
VPS9D1-203ENST00000563798 C4orf47A7E2U8 309 aa18.03■□□□□ 0.48
VPS9D1-203ENST00000563798 PATE3B3GLJ2 98 aa18.03■□□□□ 0.48
VPS9D1-203ENST00000563798 CDX4O14627 284 aaPredicted RBP18.03■□□□□ 0.48
VPS9D1-203ENST00000563798 P4HA2O15460 535 aa18.03■□□□□ 0.48
VPS9D1-203ENST00000563798 KCNK5O95279 499 aa18.03■□□□□ 0.48
VPS9D1-203ENST00000563798 PAEPP09466 180 aa18.03■□□□□ 0.48
VPS9D1-203ENST00000563798 SETSIPP0DME0 302 aa18.03■□□□□ 0.48
VPS9D1-203ENST00000563798 CD44P16070 742 aaKnown RBP18.03■□□□□ 0.48
VPS9D1-203ENST00000563798 PMLP29590 882 aa18.03■□□□□ 0.48
VPS9D1-203ENST00000563798 PTGER3P43115 390 aa18.03■□□□□ 0.48
VPS9D1-203ENST00000563798 ZNF132P52740 706 aa18.03■□□□□ 0.48
VPS9D1-203ENST00000563798 MFAP3P55082 362 aa18.03■□□□□ 0.48
VPS9D1-203ENST00000563798 IRX4P78413 519 aa18.03■□□□□ 0.48
VPS9D1-203ENST00000563798 DAB2IPQ5VWQ8 1189 aa18.03■□□□□ 0.48
VPS9D1-203ENST00000563798 KIAA1211LQ6NV74 962 aa18.03■□□□□ 0.48
VPS9D1-203ENST00000563798 TTI2Q6NXR4 508 aa18.03■□□□□ 0.48
VPS9D1-203ENST00000563798 LCLAT1Q6UWP7 414 aa18.03■□□□□ 0.48
VPS9D1-203ENST00000563798 METTL3Q86U44 580 aaKnown RBP18.03■□□□□ 0.48
VPS9D1-203ENST00000563798 TMEFF1Q8IYR6 380 aa18.03■□□□□ 0.48
VPS9D1-203ENST00000563798 PGBD3Q8N328 593 aa18.03■□□□□ 0.48
VPS9D1-203ENST00000563798 LMO3Q8TAP4 145 aa18.03■□□□□ 0.48
VPS9D1-203ENST00000563798 PIGKQ92643 395 aa18.03■□□□□ 0.48
VPS9D1-203ENST00000563798 SLC2A11Q9BYW1 496 aa18.03■□□□□ 0.48
VPS9D1-203ENST00000563798 STOML2Q9UJZ1 356 aa18.03■□□□□ 0.48
VPS9D1-203ENST00000563798 PILRBQ9UKJ0 227 aa18.03■□□□□ 0.48
VPS9D1-203ENST00000563798 HBS1LQ9Y450 684 aaKnown RBP18.03■□□□□ 0.48
VPS9D1-203ENST00000563798 PPP1R3GB7ZBB8 358 aa18.02■□□□□ 0.48
VPS9D1-203ENST00000563798 ACACBO00763 2458 aa18.02■□□□□ 0.48
VPS9D1-203ENST00000563798 ZBTB24O43167 697 aaPredicted RBP18.02■□□□□ 0.48
VPS9D1-203ENST00000563798 AP5Z1O43299 807 aa18.02■□□□□ 0.48
VPS9D1-203ENST00000563798 NDUFV2P19404 249 aa18.02■□□□□ 0.48
VPS9D1-203ENST00000563798 BMP6P22004 513 aa18.02■□□□□ 0.48
VPS9D1-203ENST00000563798 WASP42768 502 aa18.02■□□□□ 0.48
VPS9D1-203ENST00000563798 SHC2P98077 582 aa18.02■□□□□ 0.48
VPS9D1-203ENST00000563798 LMAN2Q12907 356 aa18.02■□□□□ 0.48
VPS9D1-203ENST00000563798 E2F5Q15329 346 aa18.02■□□□□ 0.48
VPS9D1-203ENST00000563798 N4BP2L1Q5TBK1 243 aaPredicted RBP18.02■□□□□ 0.48
VPS9D1-203ENST00000563798 LYSMD4Q5XG99 296 aa18.02■□□□□ 0.48
VPS9D1-203ENST00000563798 SLC23A3Q6PIS1 610 aa18.02■□□□□ 0.48
VPS9D1-203ENST00000563798 RSRC2Q7L4I2 434 aaKnown RBP18.02■□□□□ 0.48
VPS9D1-203ENST00000563798 DENND1CQ8IV53 801 aa18.02■□□□□ 0.48
VPS9D1-203ENST00000563798 RBBP8NLQ8NC74 664 aaPredicted RBP18.02■□□□□ 0.48
VPS9D1-203ENST00000563798 PIWIL1Q96J94 861 aaKnown RBP18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms