RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 HSPH1Q92598 858 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 SNRNP25Q9BV90 132 aaKnown RBP12.68□□□□□ -0.38
HERC1-205ENST00000559886 MAN1C1Q9NR34 630 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 TMEM51Q9NW97 253 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 COX16Q9P0S2 106 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 NUDT5Q9UKK9 219 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 LRRD1A4D1F6 860 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 PI4K2BG5E9Z4 385 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 PER2O15055 1255 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 ZMYND10O75800 440 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 SLU7O95391 586 aaKnown RBP12.68□□□□□ -0.38
HERC1-205ENST00000559886 FGGP02679 453 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 EPCAMP16422 314 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 KDELR1P24390 212 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 ARSEP51690 589 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 AIF1P55008 147 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 CLUL1Q15846 466 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 PPM1LQ5SGD2 360 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 SND1Q7KZF4 910 aaKnown RBP eCLIP12.68□□□□□ -0.38
HERC1-205ENST00000559886 ADGRD2Q7Z7M1 963 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 PSTKQ8IV42 348 aaKnown RBP12.68□□□□□ -0.38
HERC1-205ENST00000559886 CCDC50Q8IVM0 306 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 MNS1Q8NEH6 495 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 NTAN1Q96AB6 310 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 RNF25Q96BH1 459 aaPredicted RBP12.68□□□□□ -0.38
HERC1-205ENST00000559886 ZNF334Q9HCZ1 680 aaPredicted RBP12.68□□□□□ -0.38
HERC1-205ENST00000559886 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.68□□□□□ -0.38
HERC1-205ENST00000559886 TRPM5Q9NZQ8 1165 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 SFMBT1Q9UHJ3 866 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 FZD10Q9ULW2 581 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 TLR5O60602 858 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 TADA3O75528 432 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 HOXA9P31269 272 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 CETN2P41208 172 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 TAZQ16635 292 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 ODF2Q5BJF6 829 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 MFSD7Q6UXD7 560 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 ANKS1BQ7Z6G8 1248 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 TMEM150AQ86TG1 271 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 SLC13A5Q86YT5 568 aaPredicted RBP12.67□□□□□ -0.38
HERC1-205ENST00000559886 KCTD6Q8NC69 237 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 FAM71BQ8TC56 605 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 SERPINB11Q96P15 392 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 CDK5RAP1Q96SZ6 601 aaKnown RBP12.67□□□□□ -0.38
HERC1-205ENST00000559886 NAP1L3Q99457 506 aaPredicted RBP12.67□□□□□ -0.38
HERC1-205ENST00000559886 LRRC3Q9BY71 257 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 IL21Q9HBE4 155 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 TBX18O95935 607 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 F11P03951 625 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 PTPN7P35236 360 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 ADRA1BP35368 520 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 CDKN2BP42772 138 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 TUBP50607 506 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 ITIH3Q06033 890 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 SCAPQ12770 1279 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 NNTQ13423 1086 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 PDK2Q15119 407 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 DPYSL2Q16555 572 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 ZC3H12AQ5D1E8 599 aaKnown RBP12.67□□□□□ -0.38
HERC1-205ENST00000559886 TFDP3Q5H9I0 405 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 C10orf120Q5SQS8 335 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 SPOCD1Q6ZMY3 1216 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 RBM23Q86U06 439 aaKnown RBP12.67□□□□□ -0.38
HERC1-205ENST00000559886 ELMOD1Q8N336 334 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 OSBPL8Q9BZF1 889 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 WDCPQ9H6R7 721 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 CCSER2Q9H7U1 834 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 TLE6Q9H808 572 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 GPATCH2LQ9NWQ4 482 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 DPP7Q9UHL4 492 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 AP4E1Q9UPM8 1137 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 HCFC2Q9Y5Z7 792 aa12.67□□□□□ -0.38
HERC1-205ENST00000559886 CTAGE15A4D2H0 777 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 MSI1O43347 362 aaKnown RBP12.66□□□□□ -0.38
HERC1-205ENST00000559886 CD48P09326 243 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 CTAGE8P0CG41 777 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 CDH6P55285 790 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 EFEMP1Q12805 493 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 PPP2R5EQ16537 467 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 CA9Q16790 459 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 DUSP6Q16828 381 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 LONRF2Q1L5Z9 754 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 PABPC1LQ4VXU2 614 aaKnown RBP12.66□□□□□ -0.38
HERC1-205ENST00000559886 HECTD3Q5T447 861 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 KLHDC10Q6PID8 442 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 TADA2BQ86TJ2 420 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 CTAGE6Q86UF2 777 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 VSIG1Q86XK7 387 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 TMC8Q8IU68 726 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 CTAGE4Q8IX94 777 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 LRRN4CLQ8ND94 238 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 SPATA4Q8NEY3 305 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 MRPL38Q96DV4 380 aaKnown RBP12.66□□□□□ -0.38
HERC1-205ENST00000559886 RPGRIP1Q96KN7 1286 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 MARCH2Q9P0N8 246 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 TLR6Q9Y2C9 796 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 EFR3BQ9Y2G0 817 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 NOTCH4Q99466 2003 aa12.66□□□□□ -0.38
HERC1-205ENST00000559886 I6L893 689 aaPredicted RBP12.66□□□□□ -0.38
HERC1-205ENST00000559886 RFXAPO00287 272 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms