RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 PMS2P54278 862 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 NME3Q13232 169 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 GPR17Q13304 367 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 EIF4EBP2Q13542 120 aaPredicted RBP13.18□□□□□ -0.3
USP3-213ENST00000559711 RTP2Q5QGT7 225 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 IZUMO3Q5VZ72 239 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 HIBCHQ6NVY1 386 aaPredicted RBP13.18□□□□□ -0.3
USP3-213ENST00000559711 C1orf228Q6PIY5 440 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 ANKS3Q6ZW76 656 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 TAS1R1Q7RTX1 841 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 UNC45BQ8IWX7 931 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 PYROXD2Q8N2H3 581 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 BCL7CQ8WUZ0 217 aaPredicted RBP13.18□□□□□ -0.3
USP3-213ENST00000559711 EDEM1Q92611 657 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 B3GALT6Q96L58 329 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 RUFY1Q96T51 708 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 TTPALQ9BTX7 342 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 FOXP3Q9BZS1 431 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 EPB41L4BQ9H329 900 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 PABPC3Q9H361 631 aaKnown RBP13.18□□□□□ -0.3
USP3-213ENST00000559711 IL37Q9NZH6 218 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 PLAAQ9Y263 795 aa13.18□□□□□ -0.3
USP3-213ENST00000559711 TANC1Q9C0D5 1861 aa13.17□□□□□ -0.3
USP3-213ENST00000559711 COL4A4P53420 1690 aaPredicted RBP13.17□□□□□ -0.3
USP3-213ENST00000559711 KIAA0355O15063 1070 aa13.17□□□□□ -0.3
USP3-213ENST00000559711 IGLV3-25P01717 112 aa13.17□□□□□ -0.3
USP3-213ENST00000559711 ITGB8P26012 769 aa13.17□□□□□ -0.3
USP3-213ENST00000559711 PBX3P40426 434 aa13.17□□□□□ -0.3
USP3-213ENST00000559711 ARL4AP40617 200 aa13.17□□□□□ -0.3
USP3-213ENST00000559711 ALDH7A1P49419 539 aaKnown RBP13.17□□□□□ -0.3
USP3-213ENST00000559711 GDF10P55107 478 aa13.17□□□□□ -0.3
USP3-213ENST00000559711 FAM193AP78312 1265 aa13.17□□□□□ -0.3
USP3-213ENST00000559711 ROR1Q01973 937 aa13.17□□□□□ -0.3
USP3-213ENST00000559711 GPS1Q13098 491 aa13.17□□□□□ -0.3
USP3-213ENST00000559711 P3H1Q32P28 736 aa13.17□□□□□ -0.3
USP3-213ENST00000559711 RSPO2Q6UXX9 243 aaPredicted RBP13.17□□□□□ -0.3
USP3-213ENST00000559711 SCN4BQ8IWT1 228 aa13.17□□□□□ -0.3
USP3-213ENST00000559711 NUP93Q8N1F7 819 aa13.17□□□□□ -0.3
USP3-213ENST00000559711 ADAM32Q8TC27 787 aa13.17□□□□□ -0.3
USP3-213ENST00000559711 UBLCP1Q8WVY7 318 aaPredicted RBP13.17□□□□□ -0.3
USP3-213ENST00000559711 RSAD2Q8WXG1 361 aa13.17□□□□□ -0.3
USP3-213ENST00000559711 RIN2Q8WYP3 895 aaPredicted RBP13.17□□□□□ -0.3
USP3-213ENST00000559711 ZBTB9Q96C00 473 aa13.17□□□□□ -0.3
USP3-213ENST00000559711 ZNF689Q96CS4 500 aaPredicted RBP13.17□□□□□ -0.3
USP3-213ENST00000559711 USP29Q9HBJ7 922 aa13.17□□□□□ -0.3
USP3-213ENST00000559711 ABCC13Q9NSE7 274 aa13.17□□□□□ -0.3
USP3-213ENST00000559711 DDIT4Q9NX09 232 aa13.17□□□□□ -0.3
USP3-213ENST00000559711 TPX2Q9ULW0 747 aaKnown RBP13.17□□□□□ -0.3
USP3-213ENST00000559711 SCML2Q9UQR0 700 aa13.17□□□□□ -0.3
USP3-213ENST00000559711 SYNJ2BP-COX16A0A087WUM0 186 aa13.16□□□□□ -0.3
USP3-213ENST00000559711 BCLAF3A2AJT9 711 aaKnown RBP13.16□□□□□ -0.3
USP3-213ENST00000559711 CFAP69A5D8W1 941 aa13.16□□□□□ -0.3
USP3-213ENST00000559711 TRIM43BA6NCK2 446 aa13.16□□□□□ -0.3
USP3-213ENST00000559711 GOLGA8KD6RF30 607 aa13.16□□□□□ -0.3
USP3-213ENST00000559711 IFNB1P01574 187 aa13.16□□□□□ -0.3
USP3-213ENST00000559711 GOT1P17174 413 aa13.16□□□□□ -0.3
USP3-213ENST00000559711 YWHAGP61981 247 aaKnown RBP eCLIP13.16□□□□□ -0.3
USP3-213ENST00000559711 SEMA3BQ13214 749 aa13.16□□□□□ -0.3
USP3-213ENST00000559711 XRCC4Q13426 336 aa13.16□□□□□ -0.3
USP3-213ENST00000559711 MORF4L2Q15014 288 aa13.16□□□□□ -0.3
USP3-213ENST00000559711 EFHC2Q5JST6 749 aa13.16□□□□□ -0.3
USP3-213ENST00000559711 DARS2Q6PI48 645 aaKnown RBP13.16□□□□□ -0.3
USP3-213ENST00000559711 NECAB2Q7Z6G3 386 aa13.16□□□□□ -0.3
USP3-213ENST00000559711 SCD5Q86SK9 330 aa13.16□□□□□ -0.3
USP3-213ENST00000559711 RELL1Q8IUW5 271 aa13.16□□□□□ -0.3
USP3-213ENST00000559711 RNF168Q8IYW5 571 aaPredicted RBP13.16□□□□□ -0.3
USP3-213ENST00000559711 FAM71DQ8N9W8 422 aa13.16□□□□□ -0.3
USP3-213ENST00000559711 ATAD1Q8NBU5 361 aa13.16□□□□□ -0.3
USP3-213ENST00000559711 SPPL2BQ8TCT7 592 aa13.16□□□□□ -0.3
USP3-213ENST00000559711 DQX1Q8TE96 717 aaKnown RBP13.16□□□□□ -0.3
USP3-213ENST00000559711 RNF139Q8WU17 664 aa13.16□□□□□ -0.3
USP3-213ENST00000559711 C2orf15Q8WU43 125 aaKnown RBP13.16□□□□□ -0.3
USP3-213ENST00000559711 TRIM43Q96BQ3 446 aaPredicted RBP13.16□□□□□ -0.3
USP3-213ENST00000559711 RTP4Q96DX8 246 aa13.16□□□□□ -0.3
USP3-213ENST00000559711 PKNOX2Q96KN3 472 aa13.16□□□□□ -0.3
USP3-213ENST00000559711 SEMA4AQ9H3S1 761 aa13.16□□□□□ -0.3
USP3-213ENST00000559711 FBXO44Q9H4M3 255 aa13.16□□□□□ -0.3
USP3-213ENST00000559711 C10orf88Q9H8K7 445 aa13.16□□□□□ -0.3
USP3-213ENST00000559711 TMEM51Q9NW97 253 aa13.16□□□□□ -0.3
USP3-213ENST00000559711 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.16□□□□□ -0.3
USP3-213ENST00000559711 COX16Q9P0S2 106 aa13.16□□□□□ -0.3
USP3-213ENST00000559711 FAM92AA1XBS5 289 aa13.15□□□□□ -0.3
USP3-213ENST00000559711 MTMR11A4FU01 709 aa13.15□□□□□ -0.3
USP3-213ENST00000559711 H3BRJ5 948 aa13.15□□□□□ -0.3
USP3-213ENST00000559711 H7C0C1 242 aa13.15□□□□□ -0.3
USP3-213ENST00000559711 I6L893 689 aaPredicted RBP13.15□□□□□ -0.3
USP3-213ENST00000559711 EFCAB14O75071 495 aa13.15□□□□□ -0.3
USP3-213ENST00000559711 RNF40O75150 1001 aa13.15□□□□□ -0.3
USP3-213ENST00000559711 NUDT17P0C025 328 aa13.15□□□□□ -0.3
USP3-213ENST00000559711 AMPD1P23109 780 aa13.15□□□□□ -0.3
USP3-213ENST00000559711 RPL22P35268 128 aaKnown RBP13.15□□□□□ -0.3
USP3-213ENST00000559711 CHKAP35790 457 aa13.15□□□□□ -0.3
USP3-213ENST00000559711 ATP5OP48047 213 aa13.15□□□□□ -0.3
USP3-213ENST00000559711 HCAR3P49019 387 aa13.15□□□□□ -0.3
USP3-213ENST00000559711 ZNF135P52742 658 aaPredicted RBP13.15□□□□□ -0.3
USP3-213ENST00000559711 LBX1P52954 281 aa13.15□□□□□ -0.3
USP3-213ENST00000559711 SLC10A2Q12908 348 aaPredicted RBP13.15□□□□□ -0.3
USP3-213ENST00000559711 DDR2Q16832 855 aa13.15□□□□□ -0.3
USP3-213ENST00000559711 USP41Q3LFD5 358 aa13.15□□□□□ -0.3
USP3-213ENST00000559711 ARL13BQ3SXY8 428 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 125 ms