RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 RING1Q06587 406 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 PIGHQ14442 188 aaPredicted RBP9.63□□□□□ -0.87
LDLR-210ENST00000559340 TCEAL1Q15170 157 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 TRIP4Q15650 581 aaPredicted RBP9.63□□□□□ -0.87
LDLR-210ENST00000559340 C2CD6Q53TS8 623 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 ACBD5Q5T8D3 534 aaPredicted RBP9.63□□□□□ -0.87
LDLR-210ENST00000559340 NUGGCQ68CJ6 796 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 CC2D1AQ6P1N0 951 aaPredicted RBP9.63□□□□□ -0.87
LDLR-210ENST00000559340 HFE2Q6ZVN8 426 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 STRADAQ7RTN6 431 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 BHLHA9Q7RTU4 235 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 PHLDB2Q86SQ0 1253 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 ARID3BQ8IVW6 561 aaPredicted RBP9.63□□□□□ -0.87
LDLR-210ENST00000559340 YAF2Q8IY57 180 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 ZDHHC14Q8IZN3 488 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 OLIG1Q8TAK6 271 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 ZNF564Q8TBZ8 553 aaPredicted RBP9.63□□□□□ -0.87
LDLR-210ENST00000559340 RXFP2Q8WXD0 754 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 RFFLQ8WZ73 363 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 RNF34Q969K3 372 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 PLD4Q96BZ4 506 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 NECAB3Q96P71 396 aaPredicted RBP9.63□□□□□ -0.87
LDLR-210ENST00000559340 MYADMQ96S97 322 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 DDX50Q9BQ39 737 aaKnown RBP9.63□□□□□ -0.87
LDLR-210ENST00000559340 CNPY3Q9BT09 278 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 NUP85Q9BW27 656 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 SMOC2Q9H3U7 446 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 CCSER2Q9H7U1 834 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 FAM204AQ9H8W3 233 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 TRPV4Q9HBA0 871 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.63□□□□□ -0.87
LDLR-210ENST00000559340 IGSF9Q9P2J2 1179 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 TBC1D14Q9P2M4 693 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 NAALADL1Q9UQQ1 740 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 SH3BP1Q9Y3L3 701 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 TCRBV5S1A1TA0A578 114 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 E2F8A0AVK6 867 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 TMEM191CA6NGB0 347 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 C2CD4BA6NLJ0 364 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 BTNL10A8MVZ5 291 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 M0QYT0 321 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 PJA2O43164 708 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 KRT86O43790 486 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 ECI2O75521 394 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 APOEP02649 317 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 FYNP06241 537 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 PSMA2P25787 234 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 RFC1P35251 1148 aaPredicted RBP9.62□□□□□ -0.87
LDLR-210ENST00000559340 NAP1L1P55209 391 aaKnown RBP9.62□□□□□ -0.87
LDLR-210ENST00000559340 TBX4P57082 545 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 CCZ1BP86790 482 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 CCZ1P86791 482 aaPredicted RBP9.62□□□□□ -0.87
LDLR-210ENST00000559340 DEUP1Q05D60 604 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 MTF1Q14872 753 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 TAF5Q15542 800 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 ARL13BQ3SXY8 428 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 BRMS1LQ5PSV4 323 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 PPP1R15BQ5SWA1 713 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 MIB1Q86YT6 1006 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 ATP6V0D2Q8N8Y2 350 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 SLC35G2Q8TBE7 412 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 DQX1Q8TE96 717 aaKnown RBP9.62□□□□□ -0.87
LDLR-210ENST00000559340 DEPDC1BQ8WUY9 529 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 KHSRPQ92945 711 aaKnown RBP eCLIP9.62□□□□□ -0.87
LDLR-210ENST00000559340 AZIN2Q96A70 460 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 ELSPBP1Q96BH3 223 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 TRIM44Q96DX7 344 aaPredicted RBP9.62□□□□□ -0.87
LDLR-210ENST00000559340 PGAP3Q96FM1 320 aaPredicted RBP9.62□□□□□ -0.87
LDLR-210ENST00000559340 RPGRIP1Q96KN7 1286 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 ASB16Q96NS5 453 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 MCEEQ96PE7 176 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 CYP2S1Q96SQ9 504 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 NPY6RQ99463 290 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 KLF16Q9BXK1 252 aaPredicted RBP9.62□□□□□ -0.87
LDLR-210ENST00000559340 RNF38Q9H0F5 515 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 DDIT4Q9NX09 232 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 OSER1Q9NX31 292 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 RAPGEFL1Q9UHV5 662 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 TLR6Q9Y2C9 796 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 HCN4Q9Y3Q4 1203 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 CPQQ9Y646 472 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 ADGRG1Q9Y653 693 aa9.62□□□□□ -0.87
LDLR-210ENST00000559340 DOCK4Q8N1I0 1966 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 FAM170AA1A519 330 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 ZNF263O14978 683 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 ATMINO43313 823 aaPredicted RBP9.61□□□□□ -0.87
LDLR-210ENST00000559340 MTA2O94776 668 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 ENDOD1O94919 500 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 LATS1O95835 1130 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 TBX18O95935 607 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 CCR1P32246 355 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 RDXP35241 583 aaKnown RBP9.61□□□□□ -0.87
LDLR-210ENST00000559340 FLT3P36888 993 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 SLC11A2P49281 568 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 AIF1P55008 147 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 HADHBP55084 474 aaKnown RBP9.61□□□□□ -0.87
LDLR-210ENST00000559340 RPL7AP62424 266 aaKnown RBP9.61□□□□□ -0.87
LDLR-210ENST00000559340 PPP2R5DQ14738 602 aa9.61□□□□□ -0.87
LDLR-210ENST00000559340 HADHQ16836 314 aaKnown RBP9.61□□□□□ -0.87
LDLR-210ENST00000559340 ARHGAP29Q52LW3 1261 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms