RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 SLC25A52Q3SY17 297 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 STXBP5Q5T5C0 1151 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 GPR158Q5T848 1215 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 SH3PXD2AQ5TCZ1 1133 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 TADA2BQ86TJ2 420 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 MIB1Q86YT6 1006 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 C17orf53Q8N3J3 647 aaPredicted RBP10.03□□□□□ -0.8
CUX1-216ENST00000558469 ZNF276Q8N554 614 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 RNF10Q8N5U6 811 aaKnown RBP10.03□□□□□ -0.8
CUX1-216ENST00000558469 ARL14EPQ8N8R7 260 aaPredicted RBP10.03□□□□□ -0.8
CUX1-216ENST00000558469 TPCN2Q8NHX9 752 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 ITFG1Q8TB96 612 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 RIPOR3Q96MK2 946 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 CDK5RAP1Q96SZ6 601 aaKnown RBP10.03□□□□□ -0.8
CUX1-216ENST00000558469 TBCBQ99426 244 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 NPY6RQ99463 290 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 CNPY3Q9BT09 278 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 NACA2Q9H009 215 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 RNF38Q9H0F5 515 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 SLITRK6Q9H5Y7 841 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 UBE2ZQ9H832 354 aaPredicted RBP10.03□□□□□ -0.8
CUX1-216ENST00000558469 FAM204AQ9H8W3 233 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 WDR6Q9NNW5 1121 aaKnown RBP10.03□□□□□ -0.8
CUX1-216ENST00000558469 RRN3Q9NYV6 651 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 COX16Q9P0S2 106 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 IP6K2Q9UHH9 426 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 SFMBT1Q9UHJ3 866 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 CD207Q9UJ71 328 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 DNMT3LQ9UJW3 386 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 STAP1Q9ULZ2 295 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 CLUHO75153 1309 aa10.03□□□□□ -0.8
CUX1-216ENST00000558469 TRAV19A0A0A6YYK7 116 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 GOLGA6L9A6NEM1 432 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 M0QYT0 321 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 DPYSL4O14531 572 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 BUB1BO60566 1050 aaPredicted RBP10.02□□□□□ -0.81
CUX1-216ENST00000558469 RNF8O76064 485 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 MBL2P11226 248 aaPredicted RBP10.02□□□□□ -0.81
CUX1-216ENST00000558469 HDCP19113 662 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 KCNA5P22460 613 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 DDX6P26196 483 aaKnown RBP eCLIP10.02□□□□□ -0.81
CUX1-216ENST00000558469 GBP1P32455 592 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 MTHFRP42898 656 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 DEUP1Q05D60 604 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 NME3Q13232 169 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 PIGHQ14442 188 aaPredicted RBP10.02□□□□□ -0.81
CUX1-216ENST00000558469 CBX2Q14781 532 aaPredicted RBP10.02□□□□□ -0.81
CUX1-216ENST00000558469 IFI16Q16666 785 aaKnown RBP10.02□□□□□ -0.81
CUX1-216ENST00000558469 RAB6CQ53S08 254 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 DAB2IPQ5VWQ8 1189 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 MSANTD2Q6P1R3 559 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 GET4Q7L5D6 327 aaPredicted RBP10.02□□□□□ -0.81
CUX1-216ENST00000558469 DAAM2Q86T65 1068 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 TAC4Q86UU9 113 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 SMRP1Q8NCR6 262 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 DQX1Q8TE96 717 aaKnown RBP10.02□□□□□ -0.81
CUX1-216ENST00000558469 FNIP1Q8TF40 1166 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 FAM172AQ8WUF8 416 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 HLA-CQ95604 372 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 NT5C3BQ969T7 300 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 CALR3Q96L12 384 aaKnown RBP10.02□□□□□ -0.81
CUX1-216ENST00000558469 SLC22A12Q96S37 553 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 SLC46A2Q9BY10 475 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 ADAM33Q9BZ11 813 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 IRX2Q9BZI1 471 aaPredicted RBP10.02□□□□□ -0.81
CUX1-216ENST00000558469 RAB6CQ9H0N0 254 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 SMOC2Q9H3U7 446 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 KCND1Q9NSA2 647 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 DDIT4Q9NX09 232 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.02□□□□□ -0.811e-6■■■□□ 15.8
CUX1-216ENST00000558469 MARCH2Q9P0N8 246 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 CALCOCO1Q9P1Z2 691 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 LCMT1Q9UIC8 334 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 RASAL2Q9UJF2 1139 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 USTQ9Y2C2 406 aa10.02□□□□□ -0.81
CUX1-216ENST00000558469 XIRP2A4UGR9 3374 aa10.01□□□□□ -0.81
CUX1-216ENST00000558469 SLC12A8A0AV02 714 aa10.01□□□□□ -0.81
CUX1-216ENST00000558469 MSI1O43347 362 aaKnown RBP10.01□□□□□ -0.81
CUX1-216ENST00000558469 PALMO75781 387 aa10.01□□□□□ -0.81
CUX1-216ENST00000558469 PROSCO94903 275 aa10.01□□□□□ -0.81
CUX1-216ENST00000558469 F9P00740 461 aa10.01□□□□□ -0.81
CUX1-216ENST00000558469 CKMP06732 381 aa10.01□□□□□ -0.81
CUX1-216ENST00000558469 HMBSP08397 361 aa10.01□□□□□ -0.81
CUX1-216ENST00000558469 AVPR1AP37288 418 aa10.01□□□□□ -0.81
CUX1-216ENST00000558469 SSR1P43307 286 aaKnown RBP10.01□□□□□ -0.81
CUX1-216ENST00000558469 ATXN1P54253 815 aaKnown RBP10.01□□□□□ -0.81
CUX1-216ENST00000558469 ACAP1Q15027 740 aa10.01□□□□□ -0.81
CUX1-216ENST00000558469 OTUD1Q5VV17 481 aaPredicted RBP10.01□□□□□ -0.81
CUX1-216ENST00000558469 C11orf63Q6NUN7 778 aa10.01□□□□□ -0.81
CUX1-216ENST00000558469 SCYL2Q6P3W7 929 aa10.01□□□□□ -0.81
CUX1-216ENST00000558469 KLHDC10Q6PID8 442 aa10.01□□□□□ -0.81
CUX1-216ENST00000558469 SND1Q7KZF4 910 aaKnown RBP eCLIP10.01□□□□□ -0.81
CUX1-216ENST00000558469 STRADAQ7RTN6 431 aa10.01□□□□□ -0.81
CUX1-216ENST00000558469 CPNE8Q86YQ8 564 aa10.01□□□□□ -0.81
CUX1-216ENST00000558469 CMTM8Q8IZV2 173 aa10.01□□□□□ -0.81
CUX1-216ENST00000558469 NIPA2Q8N8Q9 360 aa10.01□□□□□ -0.81
CUX1-216ENST00000558469 CENPIQ92674 756 aaPredicted RBP10.01□□□□□ -0.81
CUX1-216ENST00000558469 RNF34Q969K3 372 aa10.01□□□□□ -0.81
CUX1-216ENST00000558469 ZSWIM3Q96MP5 696 aa10.01□□□□□ -0.81
CUX1-216ENST00000558469 SERPINB11Q96P15 392 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms