RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 HEXIM2Q96MH2 286 aaKnown RBP12.77□□□□□ -0.36
LDLR-205ENST00000557933 NDNQ99608 321 aa12.77□□□□□ -0.36
LDLR-205ENST00000557933 MYOZ2Q9NPC6 264 aa12.77□□□□□ -0.36
LDLR-205ENST00000557933 TMPRSS4Q9NRS4 437 aa12.77□□□□□ -0.36
LDLR-205ENST00000557933 SEPT10Q9P0V9 454 aa12.77□□□□□ -0.36
LDLR-205ENST00000557933 ZNF212Q9UDV6 495 aa12.77□□□□□ -0.36
LDLR-205ENST00000557933 ANGPTL2Q9UKU9 493 aa12.77□□□□□ -0.36
LDLR-205ENST00000557933 WDR90Q96KV7 1748 aa12.77□□□□□ -0.36
LDLR-205ENST00000557933 WDR27A2RRH5 827 aa12.77□□□□□ -0.37
LDLR-205ENST00000557933 VWA5AO00534 786 aa12.77□□□□□ -0.37
LDLR-205ENST00000557933 WNT10BO00744 389 aa12.77□□□□□ -0.37
LDLR-205ENST00000557933 PEX1O43933 1283 aa12.77□□□□□ -0.37
LDLR-205ENST00000557933 CCND2P30279 289 aa12.77□□□□□ -0.37
LDLR-205ENST00000557933 ASPAP45381 313 aa12.77□□□□□ -0.37
LDLR-205ENST00000557933 SCNN1BP51168 640 aa12.77□□□□□ -0.37
LDLR-205ENST00000557933 SLC18A1P54219 525 aa12.77□□□□□ -0.37
LDLR-205ENST00000557933 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.77□□□□□ -0.37
LDLR-205ENST00000557933 N4BP2L1Q5TBK1 243 aaPredicted RBP12.77□□□□□ -0.37
LDLR-205ENST00000557933 TTC39BQ5VTQ0 682 aaPredicted RBP12.77□□□□□ -0.37
LDLR-205ENST00000557933 OLFML2BQ68BL8 750 aa12.77□□□□□ -0.37
LDLR-205ENST00000557933 XYLT1Q86Y38 959 aa12.77□□□□□ -0.37
LDLR-205ENST00000557933 SCUBE3Q8IX30 993 aa12.77□□□□□ -0.37
LDLR-205ENST00000557933 FAM156AQ8NDB6 213 aa12.77□□□□□ -0.37
LDLR-205ENST00000557933 GDPD5Q8WTR4 605 aa12.77□□□□□ -0.37
LDLR-205ENST00000557933 RXFP2Q8WXD0 754 aa12.77□□□□□ -0.37
LDLR-205ENST00000557933 USP13Q92995 863 aaPredicted RBP12.77□□□□□ -0.37
LDLR-205ENST00000557933 POPDC2Q9HBU9 364 aa12.77□□□□□ -0.37
LDLR-205ENST00000557933 ZNF302Q9NR11 478 aa12.77□□□□□ -0.37
LDLR-205ENST00000557933 PDLIM7Q9NR12 457 aa12.77□□□□□ -0.37
LDLR-205ENST00000557933 DDX56Q9NY93 547 aaKnown RBP12.77□□□□□ -0.37
LDLR-205ENST00000557933 APOC4-APOC2K7ER74 178 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 APOC2P02655 101 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 NFICP08651 508 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 ARSAP15289 507 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 OSBPP22059 807 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 SERPINB5P36952 375 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 ZNF132P52740 706 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 MSLNQ13421 630 aaPredicted RBP12.76□□□□□ -0.37
LDLR-205ENST00000557933 PPM1LQ5SGD2 360 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 FBXL19Q6PCT2 694 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 IYDQ6PHW0 289 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 CEP128Q6ZU80 1094 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 MAVSQ7Z434 540 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 PCGF5Q86SE9 256 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 GALNT4Q8N4A0 578 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 PQLC3Q8N755 202 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 SNX31Q8N9S9 440 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 STKLD1Q8NE28 680 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 OR6Y1Q8NGX8 325 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 EZH1Q92800 747 aaPredicted RBP12.76□□□□□ -0.37
LDLR-205ENST00000557933 CLMNQ96JQ2 1002 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 RHBDL2Q9NX52 303 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 BTBD7Q9P203 1132 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 PPP2R3BQ9Y5P8 575 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 E7ESA3 106 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 AIM2O14862 343 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 TRPA1O75762 1119 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 ITGB3P05106 788 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 KRT7P08729 469 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 TCF7P36402 384 aaPredicted RBP12.76□□□□□ -0.37
LDLR-205ENST00000557933 BCAR1P56945 870 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 SLC18A2Q05940 514 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 KCNJ11Q14654 390 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 DLG2Q15700 870 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 MMEL1Q495T6 779 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 ABHD15Q6UXT9 468 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 C10orf107Q8IVU9 208 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 CCDC106Q9BWC9 280 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 SPATA16Q9BXB7 569 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 WWP1Q9H0M0 922 aa12.76□□□□□ -0.37
LDLR-205ENST00000557933 SLC15A5A6NIM6 579 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 TPP1O14773 563 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 DNAJC6O75061 913 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 TRUB2O95900 331 aaKnown RBP12.75□□□□□ -0.37
LDLR-205ENST00000557933 INHBCP55103 352 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 PKNOX1P55347 436 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 SNRPFP62306 86 aaKnown RBP12.75□□□□□ -0.37
LDLR-205ENST00000557933 ITGA9Q13797 1035 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 TNFAIP1Q13829 316 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 ACAP1Q15027 740 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 ZRSR2Q15696 482 aaKnown RBP12.75□□□□□ -0.37
LDLR-205ENST00000557933 LIN52Q52LA3 116 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 TEX44Q53QW1 395 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 FRMD7Q6ZUT3 714 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 SAMD7Q7Z3H4 446 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 TP53INP2Q8IXH6 220 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 ZNF398Q8TD17 642 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 CLEC4CQ8WTT0 213 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 NDRG1Q92597 394 aaKnown RBP12.75□□□□□ -0.37
LDLR-205ENST00000557933 ALKBH8Q96BT7 664 aaKnown RBP12.75□□□□□ -0.37
LDLR-205ENST00000557933 AGAP3Q96P47 875 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 CAB39LQ9H9S4 337 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 GINS2Q9Y248 185 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 HES2Q9Y543 173 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 NFASCO94856 1347 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 KLHL33A6NCF5 533 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 STX16-NPEPL1H3BU86 382 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 IRF6O14896 467 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 MICAL2O94851 1124 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 CCNIQ14094 377 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms